Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00396 ATGACTGGTTCTGGTTCTCCCTGTGGAGCCTGCAAGTTTTTAAGAAGAAAATGTGTTAGAGGCTGTGTTTTTGCTCCTTATTTCTGCAATGAACAAGGCGCTTCTCACTTTGCTGCCATTCACAAGGTTTTCGGAGCTAGCAATGTCTCCAAGCTTCTTGCCCATCTTCCTGTTTCTGATCGCCACGAAGCTGCCGTTTCCATCTCCTACGAAGCTCAAGCTCGCCTTCAAGACCCGATTTATGGCTGCGTTTCGCATATTTTCGCTCTTCAACAGCAGGTCGTCAATTTGCAGGTGCAACTAGCTTCTTTGAAAGAACAAGCTGCTCAGAGCGTTTTCAACAGTTCTGCTGCTGAAAACCCTAGTCAAAATTTATATGGGAAATTTCCTTCTCACACGCAGGATCTTTCAAATTGGGTGAAGTTGGAAAACTCAACTGAACTGTCACAATTGCATCAAAATTTCTGCCATGGCAGTTCTTCTATGCCTTTCTATAATGAGAAGAGTGTCATGGATTCTTACCCTTTGGAGAATTTAGTCGTTCCAGAAAAGAATCCCAGCTTTGGGGAGACCTCTAATTCAATATCTTCTTATGAAATGCAAACAAGCAATAGGCAGGAATGGAGTTCCGGAGTTGCAGACGAGTTTCAGTTCACAGCTTTCGGCTACTTCCACCATTGA 681 43.76 MTGSGSPCGACKFLRRKCVRGCVFAPYFCNEQGASHFAAIHKVFGASNVSKLLAHLPVSDRHEAAVSISYEAQARLQDPIYGCVSHIFALQQQVVNLQVQLASLKEQAAQSVFNSSAAENPSQNLYGKFPSHTQDLSNWVKLENSTELSQLHQNFCHGSSSMPFYNEKSVMDSYPLENLVVPEKNPSFGETSNSISSYEMQTSNRQEWSSGVADEFQFTAFGYFHH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4898563 4899333 - BLOR15358 Blo05g00396 60830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00396 226 Coils Coil 87 107 - -
Blo05g00396 226 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Blo05g00396 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 224 - -
Blo05g00396 226 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Blo05g00396 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 224 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo05g00396 Blo06g00409 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00396 Blo-Chr5:4898563 Blo12g00316 Blo-Chr12:18573057 2.71E-54 dispersed
Blo05g00396 Blo-Chr5:4898563 Blo06g00409 Blo-Chr6:23612891 1.67E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12399 PF03195 LOB 8.20E-37 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00396 K13945 - vvi:100266975 286.189