Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00493 ATGGAGGCAAGGCCCTTTTTGTTCATTCAAAGAAATGGTGCAGATCAAATTAATTGCATTGGGAAATCTGTTATTTTTCCTTCCTTCATACCAGTCCAAGAGAAATATCCTAAGTTACCTGACTCTCAACATGTTCCTATGGAAAGAGAACTTGTTACAAAGCCGCACGACCATGGCTGTCTTTTACCCTCAGACAGTGAAATAATTAATCACATGTTTTCACCATCCATGGGATTTACAACGGATGGTCACCTTGTTTCAGCTCAGGGAGAACATTCCAAAGCCTCTCCTCCTGCTTCACAGATATCGACAGATGGAGTACTACCACATTCTCATCTTGGAATACTTCCATCTACAACATCAGGTCATCACAACAAAGAAAACAACGTGGCCTGGTGTCCAGATGCAGTTTCAAGTTTTCTAGATCTTCCTGTAAATAAGCCTGTTATAGGAGATAGTCAGGTAGAGAGCAGCAGTGGTGTGGATTTGATGCAATCTGAGGAATTTAGCAAACAAAGTGATTGGCAAGACTGGGCAGATCAGCTAATAACTGATGATTCTATGACTTCTGACTGGAATGAGATCTTAGCTAATACTAACATTGCGGAGTTGGAACCTAAGGTTATGATGGCATACCAGGTTTCTAAACCATCACCAAATTTCCAAGATTGCTCACGAGTTCTTTCTTCGTCAGCAGAAAGACAGATTGTTTTCCTGCCCAATTCCTTGGCAAATAGTGTCTCAACCACCAAGTCACGTATACGTTGGACACCAGAACTTCACGAGGCATTTGTGGAGGCTGTGAACCAACTTGGTGGTGGAGCAACTCCAAAGGGTGTTTTGAAGCTCATGAAAGTTGGAGGTCTGACAATTTATCATGTGAAAAGCCATTTACAGAAATATAGAACAGCTAGGTACAGACCTGATTCCTCTGAAGGATGCTCTGACAGAAAATTGACCCCCCTCGAGGAAATATCTTCACTCGACTTGGAAACGAGTATGAATATCACTGAAGCTCTGCGTCTACAAATGGAAGTTCAGAAGAGGCTTCACGAACAGCTTGAGAATCGACTATCGACCCACCATTCTACTTCCAAAGTATGTCGAGTTTGTGGCGATGACATTGGAGTGAGAGAAGATGGTCAGCTATTCGTGGCTTGTCACGAGTGCAAATTTCCTGTCTGTCGGCCATGTTATGATTATGAAAGAAGTGAAGGCAATCAGAGCTGCCCCCAATGTAACACACGGTATAAGCGTCACAAAGGTTGTCCTAGAGTTGTTGGAGACGAAGAAAATTTCGATGCTGATGATTTCGATGATGAATTCCCTATCGATAACCATAATCTCAACGGCTCTAATGGACGCGCCGTCAACGATTCAGTAAATCCATTTAGTAGTTTAATAATCCCGAAAATGAGGATTCAAAGCGACAACAATGGCATCAAAATGGCCTCAGTTCCTTCTCCATTGCCGACAGCGGTATCGATTTCATTCTACACCGGTGACAGAGAGTCCTACAGCAATGCTGAATGGAAGGAGAGAGTAGAGAAATGGAAAGTCAGGCAAGAGAAAAAAGGTTTGATGAGCAAAGATGGTGGAAATAATGATCAAGGAGAAGAAGATGACTATCTTATGGCGGAAGCTCGACAACCTCTCTGGCGAAAAGTTCCAATATCATCTAGCAAAATCAGCCCTTATCGTATAGTGATTATACTACGGCTGATCATTCTCGCTTTCTTCTTACGATTTCGCATATTAACACCAGCTTATGATGCTTATCCCTTATGGCTTATCTCTGTTATATGTGAAATATGGTTCGCCTTCTCTTGGATACTCGATCAATTTCCAAAATGGTTCCCCATAAATCGGGAAACTTACTTGGATCGTTTGTCGATGAGGTTTGAACGTGAAGGTGAACCGAATAGTTTAACTCCGGTCGATTTTTTCGTCAGCACTGTCGACCCTCTAAAGGAGCCACCGATTATAACGGCCAACACCGTCCTGTCGATACTGGCCGTTGATTATCCGGTCAATAAGGTCAGCTGTTATGTGTCTGATGATGGTGCTTCGATGCTGTTATTCGATACGCTATCGGAAACTGCTGAATTTGCTAGAAGATGGGTGCCATTTTGCAAAAAGTATAGTATTGAGCCAAGGACTCCTGAGTTTTACTTTTCTCACAAGATTGATTACTTGAAAGATAAGGTGCTTCCAAGCTTTGTGAAGGAGCGCAGAGCTATGAAAAGGGAATATGAGGAGTTCAAAGTTAGAATCAATGCATTGGTGGCAAAGGCTCAAAAGAAACCGGAAGAAGGATGGGTCATGCAGGACGGCACGCCTTGGCCGGGAAATAATACTCGGGATCATCCTGGCATGATTCAGGTGTATCTGGGAAGTGCCGGAGCATTAGACGTGGAAGGCAAAGAACTCCCACGCCTCGTGTACGTTTCACGTGAAAAGCGACCTGGATATCAACATCATAAGAAAGCTGGTGCTATGAATGCCCTTGTTCGAGTCTCGGCCGTTCTTACAAATGCGCCTTTCATTTTGAATCTGGACTGTGATCACTATGTCAACAACAGTGGAGCAGTGAGGGAAGCCATGTGCTTTCTAATGGATCCTCAGCTTGGGAAGAAACTATGCTATGTCCAATTTCCTCAAAGATTCGACGGTATTGACCGTCACGATCGATATGCAAATCGAAACATCGTCTTCTTCGATATTAACATGAGAGGGCTTGATGGACTCCAAGGTCCGGTTTATGTTGGCACTGGATGTGTCTTCAACAGGCAAGCTTTGTATGGCTACGATCCCCCGGTGTCCGAAAAGCGGCCAAAGATGACATGCGATTGCTGGCCTTCATGGTGCTGCTGTTGTTGCGGAGGTTCGAGGAAGTCAAAATCAAAGAAAAAAGGAGAGAAAAGTTTGATTGGAGGACTGCATACAAAGAAGAAGAAAATGATGGGAAGAAACTACACAAGGAAAGGGCATGGACCCATGTTTGATCTCGAGGAGATTGAAGAAGGGCTCGAAGGTTTTGATGAATTGGAAAGATCATCAATCATGTCGCAGAAAAACTTCGAGAAACGATTCGGGCAGTCACCCGTTTTCATTGCTTCAACGCTCATGGAAGACGGTGGCCTCCGAGAAGGAACAAACAACACATCACTTGTCAAGGAGGCCATTCATGTCATAAGCTGTGGGTATGAAGAGAAAACAGAATGGGGAAAAGAGATTGGCTGGATTTATGGTTCAGTTACTGAAGATATTTTAACTGGTTTCAAGATGCATTGTAGAGGATGGAAGTCGGTTTACTGCATGCCGAAACGACCAGCTTTCAAAGGGTCAGCTCCAATAAATCTCTCCGATCGACTGCACCAAGTTCTTCGATGGGCTCTAGGCTCTGTTGAAATTTTCCTTAGTCGTCACTGCCCGCTCTGGTATGGCTATGGCGGCAAATTGAAATGGCTTGAGAGGCTTGCTTACATTAACACCATCGTCTACCCTTTTACGTCTATTCCTTTGCTTGCTTACTGCACTGTTCCAGCCGTTTGTCTCCTCACCGGAAAATTCATCATCCCCACTCCTAGCCAAACACGGTTGTGTATAAAACATCTTTCTTTTCTTACTACGCATGAGAAACTTTATAAATGTCCTTGGCTGACAAACCTAGCTAGTGTATGGTTCATGGCTCTCTTCCTCTCCATCATAGCAACTGGCATCCTAGAGCTCCGATGGAGTGGTGTCAGTATCGAAGATTGGTGGCGAAATGAGCAATTCTGGGTTATTGGCGGTGTCTCCGCCCATCTTTTCGCTGTTTTCCAAGGTTTGCTCAAAGTTCTCGCTGGAGTCGATACCAATTTCACTGTCACTTCGAAAGCAGCTGATGATGCCGAGTTTGGCGAGCTTTACCTCTTCAAATGGACAACACTTCTCATCCCTCCGACCACTCTCATAATTCTGAACATGGTCGGAGTTGTGGCCGGAGTTTCTGACGCCATTAACAATGGCTATGGCTCGTGGGGGCCTCTGTTCGGAAAACTATTTTTTTCCTTCTGGGTCATCGTTCATCTCTATCCTTTCCTTAAAGGTTTAATGGGAAGACAAAACAGGACTCCCACCATCGTTGTCCTTTGGTCTGTTCTCCTTGCATCAATTTTTTCGTTGGTTTGGGTCAGAATTGATCCTTTCTTGCCTAAACCCACTGGTCCTCTCCTCAAACAATGCGGAGTTGAGTGCTAA 4242 44.22 MEARPFLFIQRNGADQINCIGKSVIFPSFIPVQEKYPKLPDSQHVPMERELVTKPHDHGCLLPSDSEIINHMFSPSMGFTTDGHLVSAQGEHSKASPPASQISTDGVLPHSHLGILPSTTSGHHNKENNVAWCPDAVSSFLDLPVNKPVIGDSQVESSSGVDLMQSEEFSKQSDWQDWADQLITDDSMTSDWNEILANTNIAELEPKVMMAYQVSKPSPNFQDCSRVLSSSAERQIVFLPNSLANSVSTTKSRIRWTPELHEAFVEAVNQLGGGATPKGVLKLMKVGGLTIYHVKSHLQKYRTARYRPDSSEGCSDRKLTPLEEISSLDLETSMNITEALRLQMEVQKRLHEQLENRLSTHHSTSKVCRVCGDDIGVREDGQLFVACHECKFPVCRPCYDYERSEGNQSCPQCNTRYKRHKGCPRVVGDEENFDADDFDDEFPIDNHNLNGSNGRAVNDSVNPFSSLIIPKMRIQSDNNGIKMASVPSPLPTAVSISFYTGDRESYSNAEWKERVEKWKVRQEKKGLMSKDGGNNDQGEEDDYLMAEARQPLWRKVPISSSKISPYRIVIILRLIILAFFLRFRILTPAYDAYPLWLISVICEIWFAFSWILDQFPKWFPINRETYLDRLSMRFEREGEPNSLTPVDFFVSTVDPLKEPPIITANTVLSILAVDYPVNKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKYSIEPRTPEFYFSHKIDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSGAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGLQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGEKSLIGGLHTKKKKMMGRNYTRKGHGPMFDLEEIEEGLEGFDELERSSIMSQKNFEKRFGQSPVFIASTLMEDGGLREGTNNTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYINTIVYPFTSIPLLAYCTVPAVCLLTGKFIIPTPSQTRLCIKHLSFLTTHEKLYKCPWLTNLASVWFMALFLSIIATGILELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKPTGPLLKQCGVEC 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8182909 8191108 + BLOR15455 Blo05g00493 60927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00493 1413 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 251 303 IPR006447 GO:0003677
Blo05g00493 1413 Pfam MYB-CC type transfactor, LHEQLE motif 334 355 IPR025756 -
Blo05g00493 1413 SUPERFAMILY Nucleotide-diphospho-sugar transferases 659 1180 IPR029044 -
Blo05g00493 1413 Pfam Zinc-binding RING-finger 360 432 IPR027934 -
Blo05g00493 1413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 306 IPR017930 -
Blo05g00493 1413 SUPERFAMILY Homeodomain-like 249 303 IPR009057 -
Blo05g00493 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 441 IPR013083 -
Blo05g00493 1413 Coils Coil 744 764 - -
Blo05g00493 1413 SUPERFAMILY RING/U-box 356 436 - -
Blo05g00493 1413 Gene3D - 250 307 - -
Blo05g00493 1413 Coils Coil 337 357 - -
Blo05g00493 1413 Pfam Cellulose synthase 646 1405 IPR005150 GO:0016020|GO:0016760|GO:0030244
Blo05g00493 1413 Pfam Myb-like DNA-binding domain 255 302 IPR001005 -
Blo05g00493 1413 CDD mRING-HC-C4C4_CesA_plant 366 416 - -
Blo05g00493 1413 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 755 938 IPR029044 -
Blo05g00493 1413 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 355 1413 - -
Blo05g00493 1413 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 355 1413 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo05g00493 Blo16g00514 CCT
Blo05g00493 Blo10g00280 CCT
Blo05g00493 Blo16g00514 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00493 Blo-Chr5:8182909 Blo12g01081 Blo-Chr12:28512601 0 dispersed
Blo10g00280 Blo-Chr10:4032598 Blo05g00493 Blo-Chr5:8182909 7.40E-59 dispersed
Blo11g00435 Blo-Chr11:3810071 Blo05g00493 Blo-Chr5:8182909 5.64E-48 dispersed
Blo11g00268 Blo-Chr11:2164342 Blo05g00493 Blo-Chr5:8182909 0 transposed
Blo05g00493 Blo-Chr5:8182909 Blo06g00150 Blo-Chr6:6011330 1.48E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12405 PF03552 Cellulose_synt 0 CL0110 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00493 K10999 - jre:108996010 1758.04