Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00511 ATGGTGAACGGCATACTTTCAGTGAACAAAACAGACGATACAGTCGTCTGCTACGCACCATCAATGATAACCACAAATGGTATTTGGCAAGGAGACAACCCTTTGGATTATTCCCTTCCCCTCTTTGTTTTGCAGTTGACAATGGTGGTCGTCCTCACTCGCGTCCTCGTTTTCCTCCTCAAACCCTTCCGGCAACCTCGAGTCGTTTCGGAAATCTTGGGTGGCGTAATTTTGGGTCCTTCTGTTCTTGGAAGGAATGAGAAATTTGCCCATGCAATATTTCCTCTCAGAAGTGTGATGGTGCTAGAAACAATGGCGAATGTGGGTCTTCTCTATTTTCTTTTCTTAGTGGGAGTGGAGATGGACCTATCTGTAATACGTAGAACAGGTCGAAAAGCAATGGGCATAGCCATAGGAGGAATGATTCTTCCCTTCTTAATCGGAGCCTGCTTCTCCCTCCTCTTTCATAGATCAGATCCCACGATGAGCAAAGGCACTTTCATTCTCTTCCTAGGCGTTGCTCTCTCTGTCACTGCATTTCCTGTTCTTGCAAGAATACTTGCAGAGCTCAAACTCATTAACACTGAGCTCGGAAGGATTGCAATGGCGTCAGCTCTTTTCAATGACATGTGCGCATGGGTACTTCTAGCCATAGCCATTGCTCTTTCGGAAAATCAAAGCACTTCTTTCGCTTCACTTTGGGTCATTTTATCAAGTGCAGCCTTCGTTGCCTTCTCCATCATGGTCATTCGGCCTGCCATTGCCTGGATAATTAGACGGACGCCTGAGGGTGAGCCGTTCAGTGAGTTCCACATCTGTCTAATTCTCACCGGAGTAATGGTGTCCGGGTTTATTACTGACGCGATCGGAACGCATTCGGTTTTTGGTGCGTTTGTGTTTGGTCTGATTATCCCGAACGGACCACTTGGGGTGACATTGATAGAGAAGCTTGAGGATTTTGTTTCAGGGCTTTTACTCCCTCTCTTCTTCGCCATTAGTGGGCTTAAAACAGATGTAACCACAATCAAAGAACCTGGGACTTGGGGACTATTGCTTCTTGTCATTGTTCTTGCTTGTGGTGGTAAAGTTGCAGGCACTCTCTTGGTTTCCCTTTTCTATCAGATGCCTTATAACGAGGGAGTTTCTCTTGGTTTGCTTATGAACACCAAAGGCCTCATCGAGATGATCATCCTTAACGTTGGTAAAGACCATAAGGTGTTAGATGATCAGTCATTTGCGATAATGGTAATAGTGGCAGTGACAATGACAGGGATAATAACCCCAATAGTCACTGCAATTTATAAGCCAGCGAGGAGGTTCATACCCTACAAAAAGAGAACAATTCAGAGGTCCAAACTGGATTCGGAGCTTAGGATCTTGGTTTGTATTCACACCCCAAGAAATGTACCGACAATCATCAATCTCCTCGAAGCCTCAAATCCAACCAAGAGATCCCCCATTTGCATCTACGTCCTCCACCTGGTCGAGCTGACAGGTCGAGCCTCTGCCATGCTCATTGTCCACAACACCCACAAATCAGGCCGCGCCTCCCACAATCGGACCCAGGCTCAGTCTGACCACATAATCAACGCCTTCGAGAACTACGAGCAGCATGCCGGCTGCGTTTCAGTGCAGCCTCTCACAGCCATTTCTCCTTATTCCACCATGCATGAAGACATATGCAACTTGGCGGAAGATAAGAGAGTGGCATTCATCATAATCCCATTTCATAAGCAGCAGACTGTGGATGGAGGAATGGAAGCGACAAACCCTGCTTTCCGAACCGTGAACCAGAATGTGCTAGCCAATGCACCTTGCTCGGTGGGGATTCTGGTTGATCGAGGCTTGAGTGGCTCGAGTAGATTGGCACCTAAACAGGTCTCCCACAATGTTGTGGTTCTCTTCTTTGGTGGTCAAGACGACAGAGAAGCTCTCTCGTACGCTTGGCGAATGTCGGAACATCCAGGAGTTAGCCTAAGTTTGATGCGGTTTGTCGCCTTAAAAGACCCGTCGGAGCCTTCAAGGCAGCCCGAAATGAACTCAAATGACCCGAGAAGCCTTACAGTTGTTACAGACATGGAAAAAGAAAAGCAACTGGATGAAGAGTTGTTAAGCGAATTCAGGATGAAAACTATGAGCAACGAGTCAATTGTCTATACAGAGAAAGTGGTCAACAATGGGGAAGAAACAGTGGCATCAATACGATCAATGAACAACATTCATGATTTGTTCATAGTCGGGAGAGGGCAAGGGATGGTGTCGCCACTCACGGCTGGGCTGACGGACTGGAGCGAGTGTCCGGAGCTGGGTGCCATTGGAGACTTGCTTGCCTCCTCTGATTTTGCAGCCACTGCTTCGGTGTTGGTGGTGCAGCAATATATTGGAGCAGGGCCACATGGTGAAGGAGTAGGGACCCCTGATAGCCCTGTCCACCAAGTTAATGGGCATTTCAACAACTCATGGCAAATGAATTCCAGGCCTCAACCTGTCTTCTCCAAATGA 2502 47.48 MVNGILSVNKTDDTVVCYAPSMITTNGIWQGDNPLDYSLPLFVLQLTMVVVLTRVLVFLLKPFRQPRVVSEILGGVILGPSVLGRNEKFAHAIFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGRKAMGIAIGGMILPFLIGACFSLLFHRSDPTMSKGTFILFLGVALSVTAFPVLARILAELKLINTELGRIAMASALFNDMCAWVLLAIAIALSENQSTSFASLWVILSSAAFVAFSIMVIRPAIAWIIRRTPEGEPFSEFHICLILTGVMVSGFITDAIGTHSVFGAFVFGLIIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTDVTTIKEPGTWGLLLLVIVLACGGKVAGTLLVSLFYQMPYNEGVSLGLLMNTKGLIEMIILNVGKDHKVLDDQSFAIMVIVAVTMTGIITPIVTAIYKPARRFIPYKKRTIQRSKLDSELRILVCIHTPRNVPTIINLLEASNPTKRSPICIYVLHLVELTGRASAMLIVHNTHKSGRASHNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRTVNQNVLANAPCSVGILVDRGLSGSSRLAPKQVSHNVVVLFFGGQDDREALSYAWRMSEHPGVSLSLMRFVALKDPSEPSRQPEMNSNDPRSLTVVTDMEKEKQLDEELLSEFRMKTMSNESIVYTEKVVNNGEETVASIRSMNNIHDLFIVGRGQGMVSPLTAGLTDWSECPELGAIGDLLASSDFAATASVLVVQQYIGAGPHGEGVGTPDSPVHQVNGHFNNSWQMNSRPQPVFSK 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8749897 8752820 + BLOR15473 Blo05g00511 60945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00511 833 PANTHER CATION/H+ EXCHANGER 3 11 812 - -
Blo05g00511 833 Gene3D - 477 761 - -
Blo05g00511 833 Pfam Sodium/hydrogen exchanger family 49 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Blo05g00511 833 Gene3D - 41 439 IPR038770 -
Blo05g00511 833 PANTHER CATION/H + ANTIPORTER 11 812 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00511 - - - pvy:116140351 1290.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00795 Blo-Chr1:11815146 Blo05g00511 Blo-Chr5:8749897 0 dispersed
Blo03g00234 Blo-Chr3:5154183 Blo05g00511 Blo-Chr5:8749897 0 dispersed
Blo03g00235 Blo-Chr3:5160484 Blo05g00511 Blo-Chr5:8749897 0 dispersed
Blo05g00511 Blo-Chr5:8749897 Blo07g00657 Blo-Chr7:21540106 0 dispersed
Blo06g00594 Blo-Chr6:28669386 Blo05g00511 Blo-Chr5:8749897 5.64E-109 dispersed
Blo13g00808 Blo-Chr13:30833697 Blo05g00511 Blo-Chr5:8749897 6.22E-173 dispersed
Blo13g00809 Blo-Chr13:30838750 Blo05g00511 Blo-Chr5:8749897 6.80E-162 dispersed
Blo05g00511 Blo-Chr5:8749897 Blo02g01131 Blo-Chr2:42644316 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00511 . 11 811 Antiporter Super Family AT2G13620 73.5 0.0e+00 1178.7
Blo01g00795 . 211 967 Antiporter Super Family AT2G13620 67.7 4.3e-295 1010.7
Blo03g00235 . 7 782 Antiporter Super Family AT2G13620 50.4 1.4e-213 740.0
Blo02g01131 BCT 4 771 Antiporter Super Family AT2G13620 50.8 3.0e-211 732.3
Blo01g01126 . 76 818 Antiporter Super Family AT3G53720 69.8 3.4e-294 1007.7
Blo03g00234 BCT 81 779 Antiporter Super Family AT3G53720 51.1 1.1e-188 657.1
Blo03g00235 . 80 785 Antiporter Super Family AT3G53720 50.5 5.3e-186 648.3
Blo03g00235 . 1 804 Antiporter Super Family AT5G41610 67.4 1.9e-303 1038.5
Blo02g01131 BCT 1 788 Antiporter Super Family AT5G41610 67.2 1.6e-297 1018.8
Blo03g00234 BCT 1 779 Antiporter Super Family AT5G41610 67.0 2.3e-296 1015.0
Blo05g00511 . 11 797 Antiporter Super Family AT5G41610 50.8 2.5e-215 745.7
Blo01g01126 . 1 801 Antiporter Super Family AT5G41610 50.9 9.4e-210 727.2
Blo02g01131 BCT 1 769 Antiporter Super Family AT4G23700 68.1 6.6e-296 1013.4
Blo03g00235 . 1 801 Antiporter Super Family AT4G23700 65.2 8.1e-294 1006.5
Blo03g00234 BCT 7 779 Antiporter Super Family AT4G23700 61.5 3.0e-272 934.9
Blo03g00235 . 8 780 Antiporter Super Family AT3G17630 64.9 5.1e-277 950.7
Blo02g01131 BCT 1 769 Antiporter Super Family AT3G17630 65.0 2.4e-274 941.8
Blo03g00234 BCT 9 778 Antiporter Super Family AT3G17630 63.4 1.3e-272 936.0
Blo05g00511 . 11 793 Antiporter Super Family AT3G17630 50.6 4.9e-219 758.1
Blo01g01126 . 8 803 Antiporter Super Family AT3G17630 51.5 1.1e-207 720.3
Blo02g01131 BCT 1 783 Antiporter Super Family AT1G64170 58.5 6.4e-243 837.4
Blo03g00235 . 5 783 Antiporter Super Family AT1G64170 59.3 3.2e-242 835.1
Blo03g00234 BCT 9 779 Antiporter Super Family AT1G64170 55.4 1.4e-229 793.1
Blo05g00511 . 11 811 Antiporter Super Family AT2G13620 73.5 0.0e+00 1178.7
Blo01g00795 . 211 967 Antiporter Super Family AT2G13620 67.7 4.3e-295 1010.7
Blo03g00235 . 7 782 Antiporter Super Family AT2G13620 50.4 1.4e-213 740.0
Blo02g01131 BCT 4 771 Antiporter Super Family AT2G13620 50.8 3.0e-211 732.3
Blo02g01131 BCT 1 783 Antiporter Super Family AT1G64170 58.5 6.4e-243 837.4
Blo03g00235 . 5 783 Antiporter Super Family AT1G64170 59.3 3.2e-242 835.1
Blo03g00234 BCT 9 779 Antiporter Super Family AT1G64170 55.4 1.4e-229 793.1
Blo02g01131 BCT 1 769 Antiporter Super Family AT4G23700 68.1 6.6e-296 1013.4
Blo03g00235 . 1 801 Antiporter Super Family AT4G23700 65.2 8.1e-294 1006.5
Blo03g00234 BCT 7 779 Antiporter Super Family AT4G23700 61.5 3.0e-272 934.9
Blo03g00235 . 1 804 Antiporter Super Family AT5G41610 67.4 1.9e-303 1038.5
Blo02g01131 BCT 1 788 Antiporter Super Family AT5G41610 67.2 1.6e-297 1018.8
Blo03g00234 BCT 1 779 Antiporter Super Family AT5G41610 67.0 2.3e-296 1015.0
Blo05g00511 . 11 797 Antiporter Super Family AT5G41610 50.8 2.5e-215 745.7
Blo01g01126 . 1 801 Antiporter Super Family AT5G41610 50.9 9.4e-210 727.2
Blo03g00235 . 8 780 Antiporter Super Family AT3G17630 64.9 5.1e-277 950.7
Blo02g01131 BCT 1 769 Antiporter Super Family AT3G17630 65.0 2.4e-274 941.8
Blo03g00234 BCT 9 778 Antiporter Super Family AT3G17630 63.4 1.3e-272 936.0
Blo05g00511 . 11 793 Antiporter Super Family AT3G17630 50.6 4.9e-219 758.1
Blo01g01126 . 8 803 Antiporter Super Family AT3G17630 51.5 1.1e-207 720.3
Blo01g01126 . 76 818 Antiporter Super Family AT3G53720 69.8 3.4e-294 1007.7
Blo03g00234 BCT 81 779 Antiporter Super Family AT3G53720 51.1 1.1e-188 657.1
Blo03g00235 . 80 785 Antiporter Super Family AT3G53720 50.5 5.3e-186 648.3
Blo06g00594 . 35 744 Antiporter Super Family AT3G52080 55.4 2.2e-219 759.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00511 Blo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0