Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00528 ATGGAAAATACCAAAAGTGCTAGAAAGAAGCCGCAGAGCTTGAACGACCGTCATTATCGTCTCCTTCAGGATCTCTCTGCTCCTCCCAAACCCTCCAGATTAGATTACGACGGCGAGGAAGTAGAGCAAAAATCCACTATTGTTGAGCTTGAAAGCCAACTCCACCTCGGCAAAGTTTCTTCTACTGTTAATGATCACAGAGGCATTCACCAATTATCAGAACAAGTGAAAGAGGAGCCGATGAAGGTCAAAATAATTGGGAGACGGCGCCTTTGCAAACTGTCATCAAGGGATGATAAGATTGGGGTGGAAACTGATGCACCTTCATTTTCTGGTATTACCGATTTTGATTCGCCACAACCAGCCCAAAATGAAAATGAAACTAAGCACATTGATGGTGCTAGTGAAATTAGGGATATTCTCATGGACTTGAGCTCTAGGCTTGAGGGCTTGTCAATTAAGAAGAAGCAAAGAAGTCCTAAGATCTTGGGTTCAGTTGAGGACTCCTTGGGTGTTGATATGGGTCCAGTTGCCAATGAGGAAAATGAAGTCGTTTCCACTGGATATGGTGGTTCTAATTCTTCATTTTTAAATATGTCTGATCCCTTTGATTCCTTGGGGGATGCAACTACAAATGCTGTAAGTGATGTTCAGAAAGGGTCGAGTGACCGTGAAGATAAAGTAATTCTACAAAATGAGTTGAGGGGTGATTTGTTTGGCAAAAGTATGGGTCAGAAAATCCAGACTCTGGGACATCACTCAATATCCAAGATAGAAAAAGACAAAGAAGGTGATGGGCATAATTATTTAAAGGTGGAAAATCTTGATCGTGGTGCATATGGAAATAAAAATTATGGTAAAGACCAAAACAAGAATGTACAGGACATTAAAATGAAATTCATTGCAACAGGAAAAACTATGGCACCTAAAGTTCAAGAAAGGGAGGACGGTGATGAGGATGATTGTGTTGTTTTGAGTAGTGATAAAATAGGTATTGGAGGAATGAAGCAAGGTAGTAAATTCAAGGAGGACAATGATAATTCTGGCTGTTTCTACAAATTAGGTAGTCCTGGGGAGGATTTTGTTTTGGAGTGTGAAAATTCTGTGATATTGAAACGCCCAAAGTCTGCTTTCAAGTTGTCATCTAAGATTGCAAACATGTTGTATCCACATCAACGGGATGGCTTAAGGTGGCTATGGTCTCTCCATTGTCAAGGTAAGGGTGGAATTTTAGGCGATGACATGGGTTTGGGCAAAACAATGCAGATCTGTGGCTTCTTGGCTGGGTTGTATCATTCACAGTTGATAAAGAGGGCTCTGGTTGTAGCACCGAAAACCCTGCTTCCCCACTGGATTAAAGAGTTATCAGCTGTGGGTCTTTCTGAGAAGACAAGAGAATACTGTGGGCCAAATGCCAAACTCAGGCAATATGAACTTCAATATGTACTTCAGGACAAAGGTGTTCTTCTCACTACTTATGATATTGTAAGAAATAACTCAAAATCTCTGCTGGGGGGCTGCCAGTCAGATGAAGAAATGGAAGATGGTGCTACGTGGGATTATATGATACTTGATGAGGTCACTCACATTATTATTATAGTATTTGATTTCCAGAACTTATATTTAAAATCTTTGTTTATGTATGTAACTGCTTGTTTATTGACAGTTTCTTTCAATACGGTTATCAGGCAAACTCTCCATGTTTACAAAGAGCTCAGAGAACGCATTAAACCTTACTTCTTGCGCCGCTTGAAAAGTGAGGTGTTCAATGATGACAATGACCAAACGACTACCAAACTTTCGAAAAAGAATGATATCATTGTGTGGCTTAGAATGACTAACTGTCAGCGGCGACTCTATGAAGCTTTTTTGAAGAGTGAATTGGTACTTTCAGCTTTTGATGGATCACCATTGGCTGCACTTACGATTCTCAAAAAGATTTGTGACCATCCATTCCTCTTGACTAAACGAGCTGCTGAAGATGTGCTGGAAGGGATGGATTTAATACTGGATCCAGAAGATGCTGGTGTGGCGGAAAAATTAGCAAAGTATATAGCAGATGTTGCTGACAGGGATGATTATGTGGAGAAGCATGACAATGTCTCATGCAAAATATCTTTCATATTGTCTTTATTGGAAAACTTGATTCCACAGGGACATCATGTTCTTATTTTCTCCCAAACTCGCAAGATGCTCAATCTTATTGAGAATTTACTATCAACATATGGTTACAAGTTTTTACGCATAGATGGCACAACAAAAGCAAGTGATAGATTGAGAATTGTAAATGAATTCCAAGAAGGTAATGTTGCTCCTATTTTTCTTTTGACATCTCAAGTTGGCGGTTTGGGTCTAACACTAACGCAAGCTGATCGTGTAATTGTGGTTGATCCTGCTTGGAATCCAAGTACGGATAACCAAAGTGTGGATCGTGCATACCGTATTGGACAAAAGAAAGATGTCATTGTATATAGATTAATGACATGTGGGACTGTTGAAGAAAAGATATACAGAAAACAGATTTATAAAGGGGGGTTGTTTAAAACTGCAACTGAGCATAAAGAACAAATCCGATACTTCAGCCAACAGGATCTTAGGGAACTTTTCAGTCTCCCAAAAGAGGGATTTGATATTTCTGTGACCCAGCAGCAACTACATGAGGAGCATGATAACATGCATACAATGGATGAGTTTTTGAAATCCCATATAGAGTTTTTAGAAACTCTGGCAATAGCAGGCGTTAGTCACCACAATTTACTATTCTCCAAGACAGCACCTGTGGAAGTGTTGGAAGAAGATGACCACTGGATTAGGCCCAAGACCAATGATGCTGTGTATAGAGAAACGGCATCATCGAGTTCTTTACTTGAAGATGGTGTAGATTGGGCTAAGTATGCTTTCAAACCAAAGGATGTAAACTCAAACAACAAGACAACTTCACCACTAAGTGCTAGCGATGTTACAGAAGCAGAGATTCAAATGAAAATTAGCAGGCTGTCTCAAACTCTTGCAAACAAGGCTCTCATGTCGAGATTACCAGACAAGGGAGAAAAGATAGAAAGACAGATTTCTACACTGTATTCAGAGCTTTATCAACTGAGGATAGCCAGAAAAAATGAAGCTGAAGTGATTGATTTGGATGAGATTACTGGAAAACTAGACACAGTTACATCCCTCAACCGATGCTTTGGCGAGATGACCGCGAACCATGAAGTCCTCAACGACGTTGGAAGCAATGTTGGAGTAGAGCTCAACAGCGATGTTTTGAGGGTTAACTACTACAGTTTTCCTGGCTAG 3297 40.13 MENTKSARKKPQSLNDRHYRLLQDLSAPPKPSRLDYDGEEVEQKSTIVELESQLHLGKVSSTVNDHRGIHQLSEQVKEEPMKVKIIGRRRLCKLSSRDDKIGVETDAPSFSGITDFDSPQPAQNENETKHIDGASEIRDILMDLSSRLEGLSIKKKQRSPKILGSVEDSLGVDMGPVANEENEVVSTGYGGSNSSFLNMSDPFDSLGDATTNAVSDVQKGSSDREDKVILQNELRGDLFGKSMGQKIQTLGHHSISKIEKDKEGDGHNYLKVENLDRGAYGNKNYGKDQNKNVQDIKMKFIATGKTMAPKVQEREDGDEDDCVVLSSDKIGIGGMKQGSKFKEDNDNSGCFYKLGSPGEDFVLECENSVILKRPKSAFKLSSKIANMLYPHQRDGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLYHSQLIKRALVVAPKTLLPHWIKELSAVGLSEKTREYCGPNAKLRQYELQYVLQDKGVLLTTYDIVRNNSKSLLGGCQSDEEMEDGATWDYMILDEVTHIIIIVFDFQNLYLKSLFMYVTACLLTVSFNTVIRQTLHVYKELRERIKPYFLRRLKSEVFNDDNDQTTTKLSKKNDIIVWLRMTNCQRRLYEAFLKSELVLSAFDGSPLAALTILKKICDHPFLLTKRAAEDVLEGMDLILDPEDAGVAEKLAKYIADVADRDDYVEKHDNVSCKISFILSLLENLIPQGHHVLIFSQTRKMLNLIENLLSTYGYKFLRIDGTTKASDRLRIVNEFQEGNVAPIFLLTSQVGGLGLTLTQADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQIYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDISVTQQQLHEEHDNMHTMDEFLKSHIEFLETLAIAGVSHHNLLFSKTAPVEVLEEDDHWIRPKTNDAVYRETASSSSLLEDGVDWAKYAFKPKDVNSNNKTTSPLSASDVTEAEIQMKISRLSQTLANKALMSRLPDKGEKIERQISTLYSELYQLRIARKNEAEVIDLDEITGKLDTVTSLNRCFGEMTANHEVLNDVGSNVGVELNSDVLRVNYYSFPG 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9820584 9840435 - BLOR15490 Blo05g00528 60962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00528 1098 MobiDBLite consensus disorder prediction 1 40 - -
Blo05g00528 1098 Gene3D - 366 531 IPR038718 -
Blo05g00528 1098 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 866 IPR001650 -
Blo05g00528 1098 PANTHER SNF2/RAD54 FAMILY MEMBER 567 951 - -
Blo05g00528 1098 Pfam Helicase conserved C-terminal domain 704 816 IPR001650 -
Blo05g00528 1098 PANTHER SNF2/RAD54 FAMILY MEMBER 377 531 - -
Blo05g00528 1098 SMART ultradead3 383 587 IPR014001 -
Blo05g00528 1098 Pfam SNF2-related domain 565 653 IPR000330 GO:0005524|GO:0140658
Blo05g00528 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 895 IPR027417 -
Blo05g00528 1098 MobiDBLite consensus disorder prediction 111 127 - -
Blo05g00528 1098 SMART helicmild6 733 816 IPR001650 -
Blo05g00528 1098 Gene3D - 602 904 IPR027417 -
Blo05g00528 1098 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 400 571 IPR014001 -
Blo05g00528 1098 MobiDBLite consensus disorder prediction 103 127 - -
Blo05g00528 1098 PANTHER OS04G0692700 PROTEIN 377 531 - -
Blo05g00528 1098 PANTHER OS04G0692700 PROTEIN 567 951 - -
Blo05g00528 1098 CDD SF2_C_SNF 696 827 - -
Blo05g00528 1098 Pfam SNF2-related domain 391 527 IPR000330 GO:0005524|GO:0140658
Blo05g00528 1098 MobiDBLite consensus disorder prediction 1 17 - -
Blo05g00528 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 583 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00528 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - jre:109018948 1097.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00920 Blo05g00528 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00528 Blo-Chr5:9820584 Blo14g00419 Blo-Chr14:4682875 5.76E-50 dispersed
Blo02g00835 Blo-Chr2:30365116 Blo05g00528 Blo-Chr5:9820584 7.87E-32 transposed
Blo04g00920 Blo-Chr4:10886248 Blo05g00528 Blo-Chr5:9820584 3.76E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
Vvi7g580 Blo05g00528 . . . . Bpe06g00302 Bma13g00729 . . . Cma02g01737 Cma19g00099 Car02g01489 . . . Cpe15g00089 . . . . . . . . . . . . . . . . . . . . Chy04g01090 . . . Bda12g00701 . . . Bma09g00440 . . Cmo02g01780 Cmo19g00112 . . . . Cpe05g00071 . . . . . . . . Cla07g00108 Cam07g0114 Cec07g0147 Cco07g0116 Clacu07g0107 Cmu07g0172 Cre07g0478 . Csa03g02211 . Cme04g00988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12407 PF00176 SNF2_N 8.90E-18 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00528 Blo_Chr05 FPKM 50.458874 51.738594 26.005407 27.811962 14.832 15.559598 16.366926 83.768509 84.467934 86.495178