Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00533 ATGAACGGTGGGAACAACCGTAAACGGCCTGCGCCGTCGCCGGCTCAGAAACCTTCATCGTCTCCGCTGGTAGAGCGGCTGGCAACATCGCAAGAGGAAGAGTATTTGGACGAAGATGTCTTTCTCGAGGAAACTCTGCTAACCGAGGACGAGCTCATCCTGCGCGACATTGAGGAGCGCCAGGCCCTCGCCTCGCGTCTCTCGAAGTGGACTCGCCCTCCGCTGTCTTCCGCTTATGTTTCTCAATCTCAGAGCGTTGTGTTTCAGCAGCTGGAGATCGATTACGTGATTGGAGAGAGAAACCGAGAATTATTGCCTAATTCCGCTGGCCCCGCCGCCATCATCAGAATTTTTGGTGTTACGAGAGAAGGACACAGTGTTTGCTGCAACGTCCATGGATTCGAACCTTACTTTTATATTAGCTGCCCTCCTGGAATGGGTCCTGATGATATCTCCCGGTTCCACCAAGTTCTTGAGGCGAGAATGAGGGAGGTAAATAAGAACAATAAGGTGCCCAAATATGTTCATCGCATTCAGTTAGTGCAAAAAAGAAGTATTCTTGACAGAGGCATACAAATTGATGGGCTTGGAATGAAGAGCTTCATGACTTATGAAAGCAATGTTCTTTTTGCTCTGCGATTCATGATTGATTGCAACATTGTTGGTGGAAATTGGATTGAAATATATATGCTTGACAATATCCCCTTAACAGCCCCTCCTAGTTATTCAGAGTTGATCAGCCATGCCCCAGAAGGTGAATTTTCAAAGATGGCTCCCTTCCGGATATTGAGTTTTGATATTGAGTGTGCAGGTCGTAAAGGCCATTTTCCTGAGCCCACTCATGATCCTGTCATCCAGGTGGCTAATCTAGTTACTCTCCAAGGGGAGGAACAGCCTTTTATCCGCAATGTCATGACCCTTAACTCTTGCTCTTCTATAGCTGGTGTTGATGTAATGTCATTTGAGACAGAAAGAGAAGTTTTGCTTGCCTGGAGGGATTTTATCCGCGAGGTGGACCCTGATGTGGTGATTGGATATAACATCTGCAAATTCGATTTGCCTTATCTCATCGAGAGAGCTGAGAAATTGGGAGTCTCTGAATTTCCAATTCTGGGTCGCATTAGAAACAGCAGGGTTCGGGTCAAAGATACAACTTTCTCTTCTAGACAGCTTGGAACTAGGGAAGGTAAAGAAATTACAATAGAAGGGAGAGTTCAATTTGATTTGCTACAGGTTATGCAACGTGATTACAAACTGAGTTCTTATTCACTGAATTCTGTTTCGTCACATTTTCTTTCTGAACAGAAAGAAGACGTACACCATTCCATTATATCTGATTTACAGAACGGTAATTCTGAAACCAGGAGGCGTCTTGCTGTTTATTGTTTGAAGGATGCTTATCTTCCACAACGGCTGTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTCACAGGTGTCCCAATTTCATTTCTTCTTTCTAGAGGACAGAGTATTAAGGTAGTATTATCTCAACTTCTTCGGAAGGCAAAACAAAAGAATCTCGTGATTCCAAATGTTAAACAAGCAGGGTCTGAGCAAGGAACTTTTGAAGGTGCCACTGTTTTAGAGGCAAGAGCAGGATTTTATGAAAAGCCCATTGCTACATTGGATTTTGCGTCCTTGTATCCCTCCATTATGATGGCATATAATTTATGTTACTGCACCTTGGTAACTCCTGAAGATGTTCGCAAACTAAACCTTCCTCAAGAACTAGTTAATAGAACTCCTTCCGGGGAAACATTTGTACGTTCAAATTTGCAAAAGGGTATACTTCCTGAAATTCTGGAAGAACTATTATCTGCTCGAAAAAGAGCAAAAGCAGATCTAAAGGAAGCCAAAGACCCTTTTGAGAAGGCAGTATTAGATGGGCGGCAGCTGGCTTTGAAGATAAGTGCAAATTCAGTATATGGATTTACAGGAGCCACAGTTGGCCAGTTACCTTGCTTAGAGATATCTTCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACATACAAAAAAACTTGTGGAAGATAAATTTACCACACTTGGTGGCTATGAACACAATGCTGAGGTTATATATGGCGATACAGATTCAGTGATGGTGCAGTTTGGCGTGCCTACTGTGGAAGAGGCAATGAACTTGGGAAGGGAAGCAGCTGAATATATCAGTGGCACTTTTATTAAACCCATTAGATTAGAGTTCGAGAAGGTTTATTATCCGTATCTTTTAATTAGCAAAAAGAGATATGCCGGTTTGTTATGGACCAATAGGGAAAAGTTTGACAAAATGGATACAAAAGGCATTGAAACAGTTAGAAGAGACAATTGTCTATTGGTCAAAAACCTGGTTACCGAGTGCCTGAACAAAATTCTTATTGACAGAGATATTCCCGGTGCAGTACAATATGTCAAGAACATAATTTCCGACCTTCTTATGAACCGCATGGATTTATCACTTCTGGTCATTACCAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTCGAACTTGCTGAGCGTATGCGTAAGGTCAATTCCAAGGGAGAAAAGGTTATGAGTTCGGATGCTCAAAAGGAGAATACAATGGAGTGGCAAAAGGAGATTGCGGGAATTAAAGATACAATGGATTGTGATTTGGTGCAAATGCAGGAGCAGATTGCTCGAACAATTGTTGGTTGA 2733 42.55 MNGGNNRKRPAPSPAQKPSSSPLVERLATSQEEEYLDEDVFLEETLLTEDELILRDIEERQALASRLSKWTRPPLSSAYVSQSQSVVFQQLEIDYVIGERNRELLPNSAGPAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEARMREVNKNNKVPKYVHRIQLVQKRSILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEIYMLDNIPLTAPPSYSELISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEEQPFIRNVMTLNSCSSIAGVDVMSFETEREVLLAWRDFIREVDPDVVIGYNICKFDLPYLIERAEKLGVSEFPILGRIRNSRVRVKDTTFSSRQLGTREGKEITIEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVVLSQLLRKAKQKNLVIPNVKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPQELVNRTPSGETFVRSNLQKGILPEILEELLSARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMNLGREAAEYISGTFIKPIRLEFEKVYYPYLLISKKRYAGLLWTNREKFDKMDTKGIETVRRDNCLLVKNLVTECLNKILIDRDIPGAVQYVKNIISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKVNSKGEKVMSSDAQKENTMEWQKEIAGIKDTMDCDLVQMQEQIARTIVG 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10102751 10118878 + BLOR15495 Blo05g00533 60967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00533 910 PRINTS DNA-directed DNA-polymerase family B signature 551 564 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo05g00533 910 PRINTS DNA-directed DNA-polymerase family B signature 704 712 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo05g00533 910 PRINTS DNA-directed DNA-polymerase family B signature 643 655 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo05g00533 910 ProSitePatterns DNA polymerase family B signature. 706 714 IPR017964 GO:0000166|GO:0003676
Blo05g00533 910 Gene3D DNA Polymerase, chain B, domain 1 184 234 - -
Blo05g00533 910 Gene3D - 259 477 IPR036397 GO:0003676
Blo05g00533 910 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 863 - -
Blo05g00533 910 Gene3D Palm domain of DNA polymerase 534 759 IPR023211 -
Blo05g00533 910 Gene3D - 760 888 IPR042087 -
Blo05g00533 910 Gene3D - 81 258 - -
Blo05g00533 910 Pfam DNA polymerase family B 491 865 IPR006134 GO:0000166|GO:0003677
Blo05g00533 910 SUPERFAMILY Ribonuclease H-like 112 497 IPR012337 -
Blo05g00533 910 SMART polmehr3 258 718 IPR006172 GO:0000166|GO:0003676|GO:0003887
Blo05g00533 910 CDD DNA_polB_delta_exo 255 483 - -
Blo05g00533 910 Pfam DNA polymerase family B, exonuclease domain 121 427 IPR006133 -
Blo05g00533 910 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 863 - -
Blo05g00533 910 MobiDBLite consensus disorder prediction 1 27 - -
Blo05g00533 910 Gene3D Helix hairpin bin 607 659 - -
Blo05g00533 910 SUPERFAMILY DNA/RNA polymerases 517 865 IPR043502 -
Blo05g00533 910 TIGRFAM pol2: DNA polymerase (pol2) 513 862 - -
Blo05g00533 910 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01050 Blo-Chr4:14777519 Blo05g00533 Blo-Chr5:10102751 5.95E-38 dispersed
Blo05g00533 Blo-Chr5:10102751 Blo10g00356 Blo-Chr10:5553441 6.27E-72 dispersed
Blo05g00533 Blo-Chr5:10102751 Blo16g00837 Blo-Chr16:35314094 1.06E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00533 K02327 - jre:108996361 1439.86