Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00535 ATGGATTCAACCTCTAGTTCAACAGTCATCTTACGCTCTCCATTAATGGAGCTGAGGGACGAGAAAGGAGGCTTAGTTTTTGATTCAAACTTTCTGCAAAAACAACCAAACTTACCAAAAGAGTTTGTGTGGCCTCATGCAGACCTGGTTCACACCCACGAAGAGCTCAACGAGCCACTCATAGACCTAGATGGTTTCAAAAGAGGAGACGAAGAGGCAACGGCTAGAGCCACCGAGCTCATTAGGTCAGCTTGCTCCAACCATGGCTTCTTCCAAGTAATAAACCATGGAGTCGACCCGTCTCTCATTCAGGCTGCTTATGAAGAAATCGACTCTTTTTTCAAAATGCCGTTGAAGAAGAAGCTTAGTTTGAAGAGAAAACCAGGCCATGTTTCTGGGTATTCTGGCGCACATGCAGATCGTTATTCGTCAAAGCTTCCATGGAAAGAGACCTTCTCTTTTGACTACCATGGAAATGGCTCTGACCTAAACGTTGTTCACTTCTTCAAATCCTTCTTAGGAGACCATTTTGAGCACTCTGGAAGGATATACCAGAGATACTGTGAGGCAATGGAGAAGGTAGCTCTGCTAATAATGGAGCTTTTGGCAATCAGTTTGGGAGTTGAAAGATTTCATTACAGGAAATTCTTTGAAGATGGGAGTTCAATAATGCGGTGTAATTACTACCCTCCTTGTAAAAATTCAGGGTTGACTCTTGGAACTGGCCCTCACTGTGATCCAACATCACTGACGATTCTTCATCAAGATCAAGTTGGAGGGCTTCAAGTTTTTGTAAATAACAGGTGGCAAGTTGTCAGACCTCGACCAGACGCTCTCGTCATCAACATTGGCGATACATTCATGGCATTATCGAACGGAAGGTACAAAAGCTGCATGCATAGGGCAGTGGTGGACAGAGAGAGAGAGAGGAGGTCGCTTGTATTCTTCGTGAGTCCAAGAGAAGACAAAGTGGTGAGTCCCCCACAAGATCTGGTTTGCAGAGAAATGCCAAGGAAGTACCCAGATTTCACTTGGTCAGATATGTTGGAGTTTACCCAAATTCACTACAGAGCTGATGTTGCTACCCTCCAAAGCTTCACCCACTGGCTTTTATCTTCCAAATCCAAATCTTCCTTCCTCTAG 1143 44.53 MDSTSSSTVILRSPLMELRDEKGGLVFDSNFLQKQPNLPKEFVWPHADLVHTHEELNEPLIDLDGFKRGDEEATARATELIRSACSNHGFFQVINHGVDPSLIQAAYEEIDSFFKMPLKKKLSLKRKPGHVSGYSGAHADRYSSKLPWKETFSFDYHGNGSDLNVVHFFKSFLGDHFEHSGRIYQRYCEAMEKVALLIMELLAISLGVERFHYRKFFEDGSSIMRCNYYPPCKNSGLTLGTGPHCDPTSLTILHQDQVGGLQVFVNNRWQVVRPRPDALVINIGDTFMALSNGRYKSCMHRAVVDRERERRSLVFFVSPREDKVVSPPQDLVCREMPRKYPDFTWSDMLEFTQIHYRADVATLQSFTHWLLSSKSKSSFL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10173384 10175507 - BLOR15497 Blo05g00535 60969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00535 380 SUPERFAMILY Clavaminate synthase-like 31 358 - -
Blo05g00535 380 Gene3D - 31 355 IPR027443 -
Blo05g00535 380 Pfam 2OG-Fe(II) oxygenase superfamily 222 319 IPR044861 -
Blo05g00535 380 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 220 319 IPR005123 -
Blo05g00535 380 PRINTS Isopenicillin N synthase signature 307 325 - -
Blo05g00535 380 PRINTS Isopenicillin N synthase signature 81 98 - -
Blo05g00535 380 PRINTS Isopenicillin N synthase signature 244 265 - -
Blo05g00535 380 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 158 IPR026992 -
Blo05g00535 380 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 373 - -
Blo05g00535 380 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 18 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00535 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - jre:108996074 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00535 Blo-Chr5:10173384 Blo09g00122 Blo-Chr9:2940882 5.07E-140 dispersed
Blo05g00535 Blo-Chr5:10173384 Blo06g01106 Blo-Chr6:34434173 2.35E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1319 . . . . . . Bma09g00430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo05g00535 . . . . Bpe06g00298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00535 Blo_Chr05 FPKM 20.333729 20.865608 4.853559 4.770913 5.076713 6.613596 5.092408 14.539288 14.256343 13.264478