Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00554 ATGGCAGATGGTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGAGCAGTTTTTCCCAGTATTGTGGGGCGACCCAGACACACTGGTGTTATGGTTGGAATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAGTCCAAAAGAGGTATTCTCACCTTGAAATATCCTATCGAGCATGGAATTGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACCTTTTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGGTACTGCTCACAGAGGCTCCCCTTAATCCTAAGGCTAACAGAGAAAAGATGACTCAGATCATGTTTGAAACATTTAATGTCCCTGCCATGTATGTTGCCATCCAAGCTGTTCTATCTCTGTATGCAAGTGGTCGTACAACTGGAATTGTGCTGGACTCTGGTGATGGTGTGAGTCACACTGTTCCCATTTATGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTCTGGACCTTGCTGGTCGTGATCTTACAGATGCTTTGATGAAGATTCTAACAGAAAGAGGTTACATGTTCACCACAACTGCAGAACGGGAAATTGTCCGTGATATGAAAGAAAAGCTTGCCTATGTTGCTCTTGACTATGAGCAGGAGCTGGAAACTTCAAAGAGTAGTTCCTCTGTTGAGAAGAACTATGAATTGCCTGATGGTCAAGTTATTACAATTGGGGCAGAGAGATTCCGTTGTCCTGAAGTTCTCTTCCAGCCATCACTCATTGGAATGGAAGCTGCTGGAATTCATGAGACTACTTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAAGATCTGTATGGAAACATTGTCCTTAGTGGTGGTTCAACCATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTCGCACCACCAGAAAGGAAATACAGTGTGTGGATAGGAGGATCAATCCTTGCATCGCTCAGCACATTCCAGCAGATGTGGATCTCGAAGGGTGAGTATGATGAGTCTGGCCCATCTATTGTCCACAGAAAGTGCTTCTGA 1134 45.06 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11889754 11891154 - BLOR15516 Blo05g00554 60988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00554 377 Pfam Actin 5 377 IPR004000 -
Blo05g00554 377 Gene3D - 140 340 - -
Blo05g00554 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Blo05g00554 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Blo05g00554 377 PANTHER ACTIN 1 376 IPR004000 -
Blo05g00554 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Blo05g00554 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Blo05g00554 377 PRINTS Actin signature 238 254 IPR004000 -
Blo05g00554 377 PRINTS Actin signature 51 62 IPR004000 -
Blo05g00554 377 PRINTS Actin signature 63 85 IPR004000 -
Blo05g00554 377 PRINTS Actin signature 142 161 IPR004000 -
Blo05g00554 377 PRINTS Actin signature 28 37 IPR004000 -
Blo05g00554 377 PRINTS Actin signature 117 130 IPR004000 -
Blo05g00554 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Blo05g00554 377 Gene3D - 10 371 - -
Blo05g00554 377 PANTHER ACTIN 1 376 - -
Blo05g00554 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Blo05g00554 377 SMART actin_3 7 377 IPR004000 -
Blo05g00554 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00554 Blo-Chr5:11889754 Blo16g00535 Blo-Chr16:22174140 0 dispersed
Blo01g00019 Blo-Chr1:301497 Blo05g00554 Blo-Chr5:11889754 9.42E-86 transposed
Blo06g00835 Blo-Chr6:31581290 Blo05g00554 Blo-Chr5:11889754 1.32E-59 transposed
Blo07g00858 Blo-Chr7:26992515 Blo05g00554 Blo-Chr5:11889754 1.47E-40 transposed
Blo04g00958 Blo-Chr4:11695906 Blo05g00554 Blo-Chr5:11889754 0 wgd
Blo05g00554 Blo-Chr5:11889754 Blo06g00212 Blo-Chr6:9470857 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00554 K10355 - dcr:108214750 755.362