Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00558 ATGGTGAGGGACGACTTGTTCATAACGATTCCTGCCTTTTTCAGGTGTCCGATCTCGCTCGACGTGATGAAGTCTCCTGTTAGTCTCTGCACCGGAGTTACCTACGATCGTTCCAGCATCCAGCAATGGCTCGAAAAAGGAAACAACACCTGTCCATTGACTATGCAGGTGCTTCAGAGCAAGGAGTTCGTCCCTAACCGCACCCTACAGCGCCTCATCAAGGTGTGGTCTGATTCGGTTGATTCCCAAACTAACTTCGCTGAGTCGACTTTCTTGAACTCCGATGCTTTGGAAGAACAAGCCACGGAGCTCATTGAGCATCTGGCTCGGGACAAAAGCGAGAGTAGCTTCTCTGAGTCTTTATCCAAGCTGATTTGTTTTGCCAGGGAATCCGAGGAGAACCGGAAAATTCTCGGGAAAATGAACCAGCTCGTTCCGATTCTTGTTGAGTTTCTCGGCAATGTTGATGGCAGAGCTTGTGGGAATATTAATTTGATCGAACAGGCAGTTACAGTTTTAGGTTTAATCCGCAACGAAATAGAAGATAAGGAGACATTGGTGAACTCGATATTGAAAGATGATCGCGATTGCTTGTCGTCTTTGCTTTTCGTTCTGAAGCAAGGAAGCGTCGATTCACAAATTGGATCTGCCGGTATTTTGGAATCAATCGCCATCAATGTCGAAGCGAAGTTCAAAATCGCCAAAAAAGAGGGATTACTTGCCGAAATAATAAAATCAATTGGTAAAGAAAAGGATCCGAGCCTAACCGAATCTGTTTTATCATGTCTAATTTCAATCTCGATGCTGAAATGCGTCAAAATCAAGTCGGTTCACCTCGGAGTAATCAAATCACTGACAAAGCTTCTTTCAGAGCCAAACTCAACCGCAAGCGTCTCTACAATCCAAAAGGTCCTGAAATTGCTCGAAATGGTTTCATCGGTTAAAGACGGGCGGTCAGAGATTTGCGCTAACTCAGATTGCGTAGCGGCCATCGTACAGAAGCTGCTGAAGGTGTCGAATCCAGCGACAGAGCACGCGGTTACAATCTTGTGGAGCGTTTGTTATCTTTTTCGTGATCCGGCGGCGCAAGAGGCGGTTACGACGGCCAACGGATTGACGAAAATCCTGCTGTTGATACAGAGCAACTGCTCGCCGCAGATACGGCAAATGGCGATGGATTTGCTGAAAATTTTCAGAATCAATTCGAAATCGTGCTTATCGAGCTACGATACAAAGACTACTCACATCATGCCCTGTTAG 1260 46.03 MVRDDLFITIPAFFRCPISLDVMKSPVSLCTGVTYDRSSIQQWLEKGNNTCPLTMQVLQSKEFVPNRTLQRLIKVWSDSVDSQTNFAESTFLNSDALEEQATELIEHLARDKSESSFSESLSKLICFARESEENRKILGKMNQLVPILVEFLGNVDGRACGNINLIEQAVTVLGLIRNEIEDKETLVNSILKDDRDCLSSLLFVLKQGSVDSQIGSAGILESIAINVEAKFKIAKKEGLLAEIIKSIGKEKDPSLTESVLSCLISISMLKCVKIKSVHLGVIKSLTKLLSEPNSTASVSTIQKVLKLLEMVSSVKDGRSEICANSDCVAAIVQKLLKVSNPATEHAVTILWSVCYLFRDPAAQEAVTTANGLTKILLLIQSNCSPQIRQMAMDLLKIFRINSKSCLSSYDTKTTHIMPC 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12256851 12258110 + BLOR15520 Blo05g00558 60992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00558 419 SUPERFAMILY ARM repeat 96 401 IPR016024 -
Blo05g00558 419 PANTHER WDSAM1 PROTEIN 4 419 IPR045185 GO:0061630
Blo05g00558 419 SUPERFAMILY RING/U-box 5 78 - -
Blo05g00558 419 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 419 - -
Blo05g00558 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 89 IPR013083 -
Blo05g00558 419 Coils Coil 94 114 - -
Blo05g00558 419 CDD RING-Ubox_PUB 14 56 IPR045210 -
Blo05g00558 419 Gene3D - 90 230 IPR011989 -
Blo05g00558 419 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Blo05g00558 419 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Blo05g00558 419 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Blo05g00558 419 Gene3D - 248 398 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00558 Blo-Chr5:12256851 Blo16g00339 Blo-Chr16:9754998 2.16E-35 dispersed
Blo05g00558 Blo-Chr5:12256851 Blo04g01095 Blo-Chr4:16723248 1.63E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00558 - - cpap:110816075 506.523