Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00608 ATGTTAAGCTTCTCTAATGGCGGTTTGGAGAGATCAGCCATGGCCATGGCTCGACAACAAGAGTCGAACCCTCATCAACAACAACAGATCCGGAGGGAGAAGCTGCGGATGCAAGGCTTCGACCCTTCACCGCCGCCGTTAGTAGGTGTAGAGGAGGAAGAATCCGCCGGATTCAATGTCTACGAGAACGCCGGAATGTTATCGGAAATGTTCAATTACCAACCTGAAATGGCAGAGCAGCCGAGTTTCCGACCGGCGAGGCCCGTGAACAACGATTGGTACGCTAACAGACAAGGAATGGTGGTGGGATTAGGACCATTGGAAGAATTAAAGGCCAGCCGTAATCACCACCATCAAATTTCCACCATTAGTGCAGACTCAGCGGCAGCCATGCAGCTTTTTCTGATGAATCCACAGCCAAGGTCGCCATCACCGCCTCCTCCTCCTTCCTCCACCCTCCACATGCTCCTTCCAAATCCATCTTCTTCTCTCCAACCTTATGGTCAATTCACATGGATTCCAGAAGGAGGAAACACAAACCCAGCTAGTGAAATTAGAGGAATTCCTGAAATTCAAGGACTCTCTCTCTCACTCTCGTCTTCTTTACCACACCTGGAAGCAGCAAAAGCCGAAGAATTTAGACTCGCCGGAAACGGCGGATTCTTGTTCTACAATCAAGGAGGAGGATCTTCTTCATCATCACAATATTCATTTAGAAATCTAGTAAATCAAAACCAGCAAGTAACTGGCTCAGATCAACCGATTCACGTCGCGTTTGGAACTTCACTCGGATCAGTAAATTTGCTAAGAAGCTCAAAGTATTCTAAGGCAACACAAGAACTCCTGGAAGAATTTTGCAGCGTCGGGAAAGCTCAGTTGAAGAGAAACAAGTCCATCATTGAAAGAAACTCCATCCCTAGCCCGAATCTTGCAGGTGGCACTAATGGCAGTGGAGGAGGAGGAGGCGGAGGCTCTTCGTCTTCTTCAAAAGATCAACAACCTCCTATGTCATCTTGTGATAGGATTGAGCATCAAAGGAGGAAGGTGGATCGCAGATACCAAAACTACTGCGAGCAAATGCAGATAGTGGTGAATTCATTTGACATGGTGATGGGGTTCGGAGCAGCAGCCCTCTACACCGCCCTCACCCAGAAGGCAATGTCTCGCCACTTTCGATGCCTGAAGGACGCTATTGGCATGCAGCTAAAGCACAGCTGCGAGCTTCTGGGCGAGAAAGACGCAGGAGGGACGTCTGGTTTGACAAAAGGAGAGACGCCCAGACTGAAGATGTTGGAGCAGAGCTTGAGAAACCAGAGAGCTTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGCGACCACAACGAGGCTTGCCTGAAAGATCTGTCAACATTTTGAGAGCATGGCTGTTTGAGCATTTTCTTCACCCGTATCCAAGCGACGCAGATAAGCAACTGTTGGCTCGACAGACAGGTTTATCAAGAAATCAGGTATCGAACTGGTTCATTAATGCTAGGGTTAGGCTATGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAATCAAAAGATGAGGAGGGGGAGGAGGAAGAAGAAGAGGATAGATCAGAAGAGAGAGAAAGGAACAAAAAAAATGTGATTTCACAAACTCCAACGCTGTCTCAGACAACCTCCACAACATCACCACCTACAACCAAAACGACAACTCCACCACCATCGACGACAAAAACGACGACCAAAAGATCCCATTTCAATCCTCAAGAAAGCGACCCTTCACTCACTGCAATCAATGCCCAAACCTTCTCGGAAATTCAAGCAAATCAACCTATCTCTTCTGTCACGCCCAATGACCTCCCGCCACCTCACCTTTTGCAGACCTTTCAGGATGGCCATTTCGGCCCCAAACCCTTTGTCGGTGGCGGCGATTACGGCACCACCTCCGGCGGTGGGTCTTCTGTCATAAGATTCGGGACCAAGGTGGCCGGTGATGTCTCGCTCACATTAGGTCTACGCCATGCCGGAAATGTGCCTGAGAAGAATTCCTTTTCCGTCCGAGATTTCCGTGGTTATTAA 2073 48.67 MLSFSNGGLERSAMAMARQQESNPHQQQQIRREKLRMQGFDPSPPPLVGVEEEESAGFNVYENAGMLSEMFNYQPEMAEQPSFRPARPVNNDWYANRQGMVVGLGPLEELKASRNHHHQISTISADSAAAMQLFLMNPQPRSPSPPPPPSSTLHMLLPNPSSSLQPYGQFTWIPEGGNTNPASEIRGIPEIQGLSLSLSSSLPHLEAAKAEEFRLAGNGGFLFYNQGGGSSSSSQYSFRNLVNQNQQVTGSDQPIHVAFGTSLGSVNLLRSSKYSKATQELLEEFCSVGKAQLKRNKSIIERNSIPSPNLAGGTNGSGGGGGGGSSSSSKDQQPPMSSCDRIEHQRRKVDRRYQNYCEQMQIVVNSFDMVMGFGAAALYTALTQKAMSRHFRCLKDAIGMQLKHSCELLGEKDAGGTSGLTKGETPRLKMLEQSLRNQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKQLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQESKDEEGEEEEEEDRSEERERNKKNVISQTPTLSQTTSTTSPPTTKTTTPPPSTTKTTTKRSHFNPQESDPSLTAINAQTFSEIQANQPISSVTPNDLPPPHLLQTFQDGHFGPKPFVGGGDYGTTSGGGSSVIRFGTKVAGDVSLTLGLRHAGNVPEKNSFSVRDFRGY 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16317913 16323304 - BLOR15570 Blo05g00608 61042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00608 690 SMART prehox3 263 400 IPR006563 -
Blo05g00608 690 MobiDBLite consensus disorder prediction 299 345 - -
Blo05g00608 690 MobiDBLite consensus disorder prediction 518 591 - -
Blo05g00608 690 MobiDBLite consensus disorder prediction 137 159 - -
Blo05g00608 690 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 46 679 - -
Blo05g00608 690 SUPERFAMILY Homeodomain-like 453 519 IPR009057 -
Blo05g00608 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 679 - -
Blo05g00608 690 CDD homeodomain 452 513 IPR001356 GO:0003677
Blo05g00608 690 Pfam Associated with HOX 269 398 IPR006563 -
Blo05g00608 690 MobiDBLite consensus disorder prediction 521 535 - -
Blo05g00608 690 Gene3D - 446 527 - -
Blo05g00608 690 MobiDBLite consensus disorder prediction 1 32 - -
Blo05g00608 690 SMART HOX_1 452 516 IPR001356 GO:0003677
Blo05g00608 690 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677
Blo05g00608 690 MobiDBLite consensus disorder prediction 546 591 - -
Blo05g00608 690 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677|GO:0006355
Blo05g00608 690 MobiDBLite consensus disorder prediction 299 339 - -
Blo05g00608 690 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01016 Blo-Chr4:13443518 Blo05g00608 Blo-Chr5:16317913 0 dispersed
Blo05g00608 Blo-Chr5:16317913 Blo12g00539 Blo-Chr12:23334895 8.37E-74 dispersed
Blo05g00608 Blo-Chr5:16317913 Blo19g00327 Blo-Chr19:21528906 1.56E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12413 PF07526 POX 1.80E-36 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00608 - - vvi:100261554 704.901