Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00626 ATGTGGGATCTCAATGATTCGCCTGATCGGAACGGAAACAATCAATCAGAAGTCTGTTCTTCTCCCAAGACATCAATCGAAGAGTACGATGAAAAGGGTAAACGGGTCGGATCTGTCTCCAATTCCAGCTCTTCAGCCGTCGTATTCGACAACGGATCCGATGAAGACGATATCGGCGGTAATAGACGACCATTCACTGAGAAGGGAGGCAACAGCAAACTTTTTGGGTTTCCGATGACTCACGACGTACCACCAGTGACTCGTCAGTTTTTCCCGGCGGAGTTTGGTAATGATGCTTCGTCGATCGGCATCGGAAATGGAGGTGGTAACAGTGGATTGTTCCCCCGGGCTCACTGGGTTGGGGTGAAATTCAGCCGAACGGACCAGGTCTCCGGAAATATGTCGGTTGAGATTTCGCAGCCCATGAAGAAGAGTCGGCGAGGTCCTAGGTCCCGGAGCTCACAGTACCGCGGTGTCACCTTCTACCGGAGGACAGGCCGGTGGGAATCTCATATATGGGATTGTGGAAAGCAAGTCTATCTGGGTGGATTTGACACTGCGCATGCAGCTGCTCGTGCATATGACAGGGCAGCCATTAAGTTCCGGGGAGTAGAAGCCGACATAAATTTCAGCATTGAAGATTATGAAGAAGATTTAAAACAAATGAGCAATTTAACCAAGGAAGAATTTGTCCACGTTCTACGCCGACAAAGCACGGGATTTCCTAGAGGAAGCTCCAAGTATAGGGGCGTAACATTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGACAATTTCTAGGCAGAAAGTACATCTACTTGGGTTTGTTTGATACAGAGATTGAAGCTGCGAGGGCATATGACAAAGCTGCCATTAAATTCAATGGCAAAGAGGCTGTTACCAATTTTGATGCAAGCAACTATGAAAATGAGCTCAACCCAGCAGATGCTTCAGCTAATAATGGCGGTGATCACAATCTTGATTTAAGTTTAGGCAATTCGAGGTCAAAGCAAACTAACCCGTCATGTTTTAATGAGGATAATCAACATCCATCAAGATCAATACCATTTGAGAGAGAGTGGCAAACTCCAGTGATCAATCCTCCTCGGGAATCAAAGGGAATTAGCAGATATCTTGAGACAGAAACCATGCAGCTTCTAAGCCAAACTCATCTTCATTCCCCAACCTCTGATGGAAGGCAAAGATATGGGCAATTCGGGCCTGTGCCGTACCCTATTCTTCATAACTACTACTCTCCTCACCTTTCTTCATCAAATTGCCAAGTGGGAGAACCGGTTCAGTCTTTCTCATTTTCATCTGGCCTTCGGGCATTTGACGAAATGAGAGAGAGGGAGAGAAGACCGAGAGAGCGAGGGAGACGCGAGGGAGAAGAGGAAGGGCTCTGGCTCGGTTGGGACTCCCTCGCAGCGGGTGTGGCAAATAGTGAGCGGCAACTGGAGACGATGGAAGCGTCGAGCTTCGTAGATTGGTTCGGTGCAAAGCTTGGGTTGCCGGATTTGGCGTCGACCATTGACGCTTTGTCGATTTTGGTTGTCGGCGACAATGGATGGTGA 1575 48.38 MWDLNDSPDRNGNNQSEVCSSPKTSIEEYDEKGKRVGSVSNSSSSAVVFDNGSDEDDIGGNRRPFTEKGGNSKLFGFPMTHDVPPVTRQFFPAEFGNDASSIGIGNGGGNSGLFPRAHWVGVKFSRTDQVSGNMSVEISQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGRKYIYLGLFDTEIEAARAYDKAAIKFNGKEAVTNFDASNYENELNPADASANNGGDHNLDLSLGNSRSKQTNPSCFNEDNQHPSRSIPFEREWQTPVINPPRESKGISRYLETETMQLLSQTHLHSPTSDGRQRYGQFGPVPYPILHNYYSPHLSSSNCQVGEPVQSFSFSSGLRAFDEMRERERRPRERGRREGEEEGLWLGWDSLAAGVANSERQLETMEASSFVDWFGAKLGLPDLASTIDALSILVVGDNGW 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18666042 18675157 + BLOR15588 Blo05g00626 61060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00626 524 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 MobiDBLite consensus disorder prediction 133 155 - -
Blo05g00626 524 MobiDBLite consensus disorder prediction 333 353 - -
Blo05g00626 524 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 MobiDBLite consensus disorder prediction 7 23 - -
Blo05g00626 524 MobiDBLite consensus disorder prediction 36 50 - -
Blo05g00626 524 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 MobiDBLite consensus disorder prediction 333 351 - -
Blo05g00626 524 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Blo05g00626 524 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700|GO:0006355
Blo05g00626 524 MobiDBLite consensus disorder prediction 1 73 - -
Blo05g00626 524 Pfam AP2 domain 246 296 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 428 - -
Blo05g00626 524 SUPERFAMILY DNA-binding domain 246 306 IPR016177 GO:0003677
Blo05g00626 524 CDD AP2 155 210 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Blo05g00626 524 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
Blo05g00626 524 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00626 Blo-Chr5:18666042 Blo16g00405 Blo-Chr16:14951967 8.52E-150 dispersed
Blo10g00553 Blo-Chr10:15230884 Blo05g00626 Blo-Chr5:18666042 5.20E-12 dispersed
Blo05g00626 Blo-Chr5:18666042 Blo13g01099 Blo-Chr13:33141228 4.76E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12415 PF00847 AP2 3.10E-10 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00626 K09284 - jre:109009102 513.842