Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00676 ATGGACAGATTCAAATCGGACGCGACCATGTTTCGTCTGCATTCATCCGCTGAATCGTCTGAATTGTCCATCAAAATGGACAGATTCAAATCGGACGCGAGGCATCTTCGTCCGCTTTCGTCCGCATGTACACAAAATGTATTGGGACACAAAGTCTCATCCTTGCCTCGTCCTCACCTCGCGCTCTGGAGAGTTTCGGATGAGGATATTCGTCTGCATGCCATCTGCTATATCGTCCGCAAGACCACAGACAAATTGAAAAGCAAAAGCGCCGGAGCAAGCAAGAAAGGGAAGAAAGCTGCAAAGGATCCAAACAAGCCTAAGAGACCTGCCAGTGCCTTCTTCGTATTCATGGAGGACTTTAGGAAGCAGTTCAAGATAGATCATCCCAAGAACAAATCTGTTGCTGCGGTTGGTAAAGCAGGAGGTGACAAATGGAAATCAATGTCTGATGCTGAGAAAGCCCCCTTTGTTGCAAAGGCAGAGAAGAGGAAAACTGAGTACAACAAGAACATGCTGGCTTACAATAAGAAAATTGCTGAGGGGGGAAATGGTGAAGATGAATACGAATCTGACAGATCCAAATCTGAAGTGAATGATGATGACAATGAAGAGGAGGATGGCAGTGGCGAGGAAGACGACGAGGAGTAG 651 46.7 MDRFKSDATMFRLHSSAESSELSIKMDRFKSDARHLRPLSSACTQNVLGHKVSSLPRPHLALWRVSDEDIRLHAICYIVRKTTDKLKSKSAGASKKGKKAAKDPNKPKRPASAFFVFMEDFRKQFKIDHPKNKSVAAVGKAGGDKWKSMSDAEKAPFVAKAEKRKTEYNKNMLAYNKKIAEGGNGEDEYESDRSKSEVNDDDNEEEDGSGEEDDEE 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22241159 22246268 - BLOR15638 Blo05g00676 61110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00676 216 MobiDBLite consensus disorder prediction 88 109 - -
Blo05g00676 216 CDD HMGB-UBF_HMG-box 107 172 - -
Blo05g00676 216 SUPERFAMILY HMG-box 93 181 IPR036910 -
Blo05g00676 216 Coils Coil 158 178 - -
Blo05g00676 216 Gene3D High mobility group box domain 90 185 IPR036910 -
Blo05g00676 216 MobiDBLite consensus disorder prediction 199 216 - -
Blo05g00676 216 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 107 176 IPR009071 -
Blo05g00676 216 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 80 213 IPR031061 -
Blo05g00676 216 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 80 213 - -
Blo05g00676 216 SMART hmgende2 106 177 IPR009071 -
Blo05g00676 216 Pfam HMG (high mobility group) box 107 176 IPR009071 -
Blo05g00676 216 MobiDBLite consensus disorder prediction 181 198 - -
Blo05g00676 216 MobiDBLite consensus disorder prediction 88 106 - -
Blo05g00676 216 MobiDBLite consensus disorder prediction 176 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00676 K25507 HMGBP; high mobility group B protein, plant - csv:101203658 175.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00676 Blo-Chr5:22241159 Blo12g00851 Blo-Chr12:26791293 2.62E-42 dispersed
Blo05g00676 Blo-Chr5:22241159 Blo01g01637 Blo-Chr1:56197879 1.11E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1195 . . Bda04g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0896 Cone12ag0868 . . . . . . Blo05g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12420 PF00505 HMG_box 4.20E-21 CL0114 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00676 Blo_Chr05 FPKM 11.53349 13.952967 16.728436 14.406929 17.866154 17.384214 20.817114 18.656527 18.319244 21.273603