Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00677 ATGAGCGGAGGCTTCTCATACCCTCCCATTGATCCCACCACCTTCGACCTCGTTGTCGTTGGCACTGGTCTACCTGAATCTATAATCGCCGCCGCCGCTTCCTCCCGCGGCAAAACAGTCCTCCATGTTGACCCCAATCCCTTCTACGGCTCCCACTTTTCCTCTCTACTACTCCATGATTTAACCGCTTTTCTCGATTCTTCTTCTTCACCTCCGCCGCCTTTGTCCTACTCTCACTCTCCCGACGACCTAGATTATGCATCCGTACATCTCGCCACCAGGCCCCTGTATTCGCACGTCGAGGTCTCTTCCTACTGCCCTGATGTTATCCAAGAACATTCCATAAAGTTTAACATTGATTTGGCCGGTCCAAGGGTTTTGCTTTGCGCCGATAAATGTATTGACATGATTCTGAAATCAGGTGCTAGCCAGTACTTGGAATTCAAGAGCGTCGATGCGAGCTATACATGCGATGACCATGGGATGTTGTCCAGTGTACCCGACTCTCGCGCCGCGATATTTAAGGACAAGAGTCTAGGGTTGAAAGAGAAGAACCAGTTGATGAGATTTTTCAAGCTGGTTCAGCAGCACTTGGATTCCGACACTGGCGGCGAGCGCTCAGGAATTTCTGAGGAAGATATGGAGACTCCATTTGTTGATTTCTTGAACAAAATGCAGTTGCCTCCCAAGATAAAAACGTTTGCACAGTTGCAAGGAGTTCATGCATCTATAACTAGTTTTCTTGGACAAGTAGTCAAGATTATTCTATATGCCATTGCTATGGTAGATTATGATCAAGAGGACATTAAAGAATCCACAGACATTGTCAAGACTACAGAGGGGATAAATCGTTTGGCTATGTACCATTCATCAGTTGGCAGGTTTGCTAATGCACCTGGGGCTTTGATTTATCCAATGTATGGTCAAGGAGAACTAGCTCAAGCATTTTGTCGCCGTGCAGCTGTCAAAGGATGTTTATACAGTGCATTTCATGGGAGGGTAAGAGAGGCACCTGAGTCTTGTCAGTGTTTCATTTCTGCTGGAGTGTACTTCGAATGCCTGTTATTGCCCTTCTTGCATAATGGACAGTACAAGGGTGTCAGATTAGCTTCAGGTCAGGATATATTGAGCCATGATTTGGTGCTAGACCCATCCTTCATTGTGCCATTGCCATTTTGTTCATCTCCACCAGATCAGTTAAGGGAATGTTTTCAAGATTTAAGTCTCAAAGAAGTTAAAGGAAATGTTGCTAGGGGAATATGTATAGCCAGTCGTTCTTTGATGCCAGATGTATTGAATTGTCTGGTGATATACCCTCCTAAGACTTTGTTTCCTGAGCAGGTCAGATCAATTCGAGTACTACAGATAGGGGGAAATTTAGCTGTTTGTCCTTTGGGCATGTCGGTTATTTACATATCCACAGGTTGTGATGAAGCAGAGCAGGGGAAGAAAATACTACACGCTGCAGTGGATGCAATTATCTCACTTCTCAGTTCAAGAGATCCTGATAGCTGCTCTCCGGGTGAAGATGGCAAAATGGAGGATGTAAAACCCCCTCTACTATGGAGTGCATTGTATATTCAGGAAATGCCAAGCATGGGTTCATGGGGATCTATTTACTCCTCTCCTATGCCAGGTGGAAACATAAACTACGATGATCTTTTGGAGGAAACTTTAAAGTTGTTGCAGAAGATGTATCCGCAAGAAGAATTCTTTCCAGAGACCTCACTAGAAAAGACTGATGAGGTTGAGGTTGGTCTCGACCTGGACGATTAA 1776 44.99 MSGGFSYPPIDPTTFDLVVVGTGLPESIIAAAASSRGKTVLHVDPNPFYGSHFSSLLLHDLTAFLDSSSSPPPPLSYSHSPDDLDYASVHLATRPLYSHVEVSSYCPDVIQEHSIKFNIDLAGPRVLLCADKCIDMILKSGASQYLEFKSVDASYTCDDHGMLSSVPDSRAAIFKDKSLGLKEKNQLMRFFKLVQQHLDSDTGGERSGISEEDMETPFVDFLNKMQLPPKIKTFAQLQGVHASITSFLGQVVKIILYAIAMVDYDQEDIKESTDIVKTTEGINRLAMYHSSVGRFANAPGALIYPMYGQGELAQAFCRRAAVKGCLYSAFHGRVREAPESCQCFISAGVYFECLLLPFLHNGQYKGVRLASGQDILSHDLVLDPSFIVPLPFCSSPPDQLRECFQDLSLKEVKGNVARGICIASRSLMPDVLNCLVIYPPKTLFPEQVRSIRVLQIGGNLAVCPLGMSVIYISTGCDEAEQGKKILHAAVDAIISLLSSRDPDSCSPGEDGKMEDVKPPLLWSALYIQEMPSMGSWGSIYSSPMPGGNINYDDLLEETLKLLQKMYPQEEFFPETSLEKTDEVEVGLDLDD 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22260277 22265555 + BLOR15639 Blo05g00677 61111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00677 591 SUPERFAMILY FAD/NAD(P)-binding domain 12 327 IPR036188 -
Blo05g00677 591 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 11 575 - -
Blo05g00677 591 SUPERFAMILY FAD-linked reductases, C-terminal domain 413 532 - -
Blo05g00677 591 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 89 530 - -
Blo05g00677 591 PANTHER RAB GDP-DISSOCIATION INHIBITOR 11 575 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 Gene3D - 12 571 IPR036188 -
Blo05g00677 591 Pfam GDP dissociation inhibitor 95 327 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 Pfam GDP dissociation inhibitor 14 71 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 PRINTS Rab GDI/REP protein family signature 34 51 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 PRINTS Rab GDI/REP protein family signature 183 198 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 PRINTS Rab GDI/REP protein family signature 133 149 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 PRINTS Rab GDI/REP protein family signature 16 34 IPR018203 GO:0005092|GO:0007264
Blo05g00677 591 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 166 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00677 K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A - zju:107424355 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00677 Blo-Chr5:22260277 Blo13g00192 Blo-Chr13:7816999 9.41E-20 dispersed
Blo05g00677 Blo-Chr5:22260277 Blo04g01359 Blo-Chr4:31427406 7.95E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1191 . . Bda04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0894 Cone12ag0865 . . . . . . Blo05g00677 . . . . Bpe06g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008575 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 0 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00677 Blo_Chr05 FPKM 4.898993 5.654668 2.361347 2.213958 0.616579 0.448779 0.3669 3.267089 2.693395 3.343804