Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00700 ATGGTTCGGAATCGAAACCGAGATTCGGGTCCAGTTTCGGATCCGGTTCCAGTTCCGGTTTCGGTTCCTCACTCTTGGAATCGAGAACCGAATGCTTATCTTTCTCGTCTCTCTACGTCATTGCCGCATTCCTTCGGAAATTTCTTTCACAAACTGGAGCAAATGTTCCATTTCGCTGTTTCTGCTGTTATCGGAAGCATCCTCTCTGCGATTCTCACATTCTTCTTTGCTTTAGTGGGCACCTTGTTAGGGGCGATGACTGGGGCATTGATAGGGCAAGAAACGGAGAGCGGTTTTGTGCGTGGGGCTGCGGTGGGAGCAATATCAGGAGCTGTTTTCTCAATTGAAGTCTTTGAATCATCCCTAGTTATCTGGAAATCAGATGAATCTAGAATAGGCTGCGTTCTCTACCTGATTGATGTCATTGTGAGCCTCCTTAGTGGAAGACTAGTTCGAGAAATGATTGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAGATGGGTGCAATTGAGAGCTTTGAAGATGTCTCAAACATTTTTGACACGAGCAGTGGAAAAGGACTGCCAGGAGACTCTGTTGAAAAAATTCCAAAACTCATAATTTCTTTCACCAACAACGTGGATGCTTCCTGTTCAGTTTGCCTTCAGGATTTTCAGCTGGGAGAGACGGTAAGAAGCTTACCTCAATGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTTCTAAGACATGGCTCTTGCCCATTATGCAGAAGGGATCTTTGA 771 45.65 MVRNRNRDSGPVSDPVPVPVSVPHSWNREPNAYLSRLSTSLPHSFGNFFHKLEQMFHFAVSAVIGSILSAILTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVIWKSDESRIGCVLYLIDVIVSLLSGRLVREMIGPAMLSAVQSQMGAIESFEDVSNIFDTSSGKGLPGDSVEKIPKLIISFTNNVDASCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLLRHGSCPLCRRDL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23832693 23834833 + BLOR15662 Blo05g00700 61134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00700 256 Pfam Ring finger domain 210 253 IPR001841 -
Blo05g00700 256 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 40 256 - -
Blo05g00700 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 256 IPR013083 -
Blo05g00700 256 SMART ring_2 211 252 IPR001841 -
Blo05g00700 256 CDD RING-H2_PA-TM-RING 211 253 - -
Blo05g00700 256 SUPERFAMILY RING/U-box 201 256 - -
Blo05g00700 256 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 40 256 IPR044523 -
Blo05g00700 256 ProSiteProfiles Zinc finger RING-type profile. 211 253 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00872 Blo-Chr4:9690159 Blo05g00700 Blo-Chr5:23832693 1.13E-124 dispersed
Blo05g00700 Blo-Chr5:23832693 Blo01g01251 Blo-Chr1:47525130 1.91E-15 dispersed
Blo05g00700 Blo-Chr5:23832693 Blo03g01452 Blo-Chr3:41149327 3.29E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00700 - - fve:101312761 367.081