Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00780 ATGGCGGATCACGCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACCGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGTCTCGAGACTGACGGTAGGGATTTTATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGAATGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCATTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTCTTCGTGACAAGGGACATTTTATTTATATTTCTGGTGGTTCAGCTTGTGATAGCTTCATTATCATATATGGTGTATTTGATAGATGGTTACCAAAAGAACTGGCTTCGTCTTGCATGGGGTTTTGATAATGAACTCAGTTTCTACTACATATGTGGAGCACTTCTGTTTTTCGCCTTGCTTGGTCTATCGGGGTGTTTTATTACATGTTATGATCGAAGAGTTAGAAATGATTTGGCTCAGCCTTGCAGAGAATTATGTCTTTGTTGCTGTCACCCTGGAGTTTGTGCAGATTGTCATTTACCTGGCACCCTCTGTATGTGGACTGACTGTACTACTTGCTTTGAAAGTTGTGCCACCATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGCGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACAGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTCGGACAACGAATTTGGCAACGACATTATCACATACTTGCGAAGAGAATGCTGACCAAAGAGTATGTAGTTGAGGATGTGGATGGTGAGATCACGGGAACGGACTGGTCTCCTCCACCGCTTCCACCCGAGCATGTTCAACAGCTGAAAACACTTGGTCTCCTATGA 969 43.96 MADHADPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLVIASLSYMVYLIDGYQKNWLRLAWGFDNELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28442084 28445349 - BLOR15742 Blo05g00780 61214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00780 322 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 322 - -
Blo05g00780 322 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Blo05g00780 322 SMART ringv_2 33 82 IPR011016 GO:0008270
Blo05g00780 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
Blo05g00780 322 SUPERFAMILY RING/U-box 30 86 - -
Blo05g00780 322 CDD RING_CH-C4HC3_MARCH 34 82 - -
Blo05g00780 322 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Blo05g00780 322 PANTHER - 10 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00780 Blo-Chr5:28442084 Blo14g00463 Blo-Chr14:5710144 5.43E-71 dispersed
Blo05g00780 Blo-Chr5:28442084 Blo01g00426 Blo-Chr1:4835352 2.77E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00780 - - csin:114258189 622.083