Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00784 ATGGGTAAAGGAGGAGGATGTGTTCCGAGCAAGAAAAAGGCACCTAAGGTGACTTACGTCGCTGCCGACGCCGAAAACCTGCAGCTTGATGGTGATGCAACAAATTCGCCGATATCGGTTGAGGCTAATCTTCCGGAGGTCTCCGTTTCTGATGCCGAAATTCAGGCGACTGTTTTGCCGCCATTTGAGAAGTTGAAGATTTTTATAGTGTTTTACTCTATGTATGGTCATGTGGAAAGCTTAGCTAGAAGGATGAAGAACGGGATCGATGGGGTTGATGGGGTAGAGGGAATTTTGTACAGAGTGGAAGAGACGTTGCCCGAAGAAGTTTTGGAGAAGATGCAAGCCCCTCCTAAGGACCCGGCGATTCCGGTGATATCGGCTGCGGAGTTGGCGGCTGCGGATGGGATTTTGTTTGGGTTTCCGACGAGATACGGGTGTATGGCTGCGCAGATGAAGGCGTTCTTCGATTCAACAGGGCAGCTATGGAAGGAGCAGAGGCTCGCCGGAAAACCCGCTGGATTCTTTGTTAGTACTGGCACACAAGGCGGCGGCCAAGAAACAACTGCATGGACAGCGATTACCCAATTGGCCCATCACGGAATGCTGTTTGTTCCGATCGGATACACTTTTGGGGCTGGTATGTTCAAGATGGACTCGATTCGAGGGGGTTCTCCGTACGGAGCTGGAGTCTTTGCTGGTGATGGGACGAGACAGCCGAGCGAAACAGAGTTGGCACTTGCTGAGCATCAAGGCAAGTACATGGCTGCTGTGGTAAAAAAACTCCTTCCACTTTGA 798 51.13 MGKGGGCVPSKKKAPKVTYVAADAENLQLDGDATNSPISVEANLPEVSVSDAEIQATVLPPFEKLKIFIVFYSMYGHVESLARRMKNGIDGVDGVEGILYRVEETLPEEVLEKMQAPPKDPAIPVISAAELAAADGILFGFPTRYGCMAAQMKAFFDSTGQLWKEQRLAGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTRQPSETELALAEHQGKYMAAVVKKLLPL 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28753526 28755338 + BLOR15746 Blo05g00784 61218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00784 265 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 66 262 IPR010089 GO:0003955|GO:0010181
Blo05g00784 265 Gene3D - 64 263 IPR029039 -
Blo05g00784 265 PANTHER NAD(P)H:QUINONE OXIDOREDUCTASE, TYPE IV PROTEIN 32 262 - -
Blo05g00784 265 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 32 262 - -
Blo05g00784 265 Pfam NADPH-dependent FMN reductase 82 207 IPR005025 GO:0016491
Blo05g00784 265 SUPERFAMILY Flavoproteins 66 262 IPR029039 -
Blo05g00784 265 ProSiteProfiles Flavodoxin-like domain profile. 67 255 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00784 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - jre:118343957 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00784 Blo-Chr5:28753526 Blo15g00688 Blo-Chr15:21317889 1.07E-120 dispersed
Blo05g00784 Blo-Chr5:28753526 Blo07g00931 Blo-Chr7:28487874 5.09E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g926 . . Bda04g00065 . . . Bma09g00061 . . . Cma03g00770 . Car03g00700 . Sed10g0902 . Cpe10g00593 Bhi03g01268 Tan03g1957 Cmetu08g1080 . Hepe04g1488 . . Cla01g01885 Cam01g1977 Cec04g1628 Cco04g1693 Clacu01g1997 Cmu01g1867 Cre04g1549 . . . . Lsi01g00700 . . Cme08g00825 Blo05g00784 . . . . Bpe06g00055 . . . Cmo03g00799 . . . . . . . . . . . . . . . . . . . . . . Csa06g03217 Chy02g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011297 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00784 Blo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.096974 0.0 0.039559
Blo05g00784 Blo_Chr05 FPKM 0.028036 0.0 0.0 0.0 0.0 0.0 0.0 0.115717 0.04932 0.079556
Blo05g00784 Blo_Chr05 FPKM 0.055909 0.0 0.0 0.0 0.0 0.0 0.0 0.147658 0.078913 0.08302
Blo05g00784 Blo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.127221 0.029593 0.0