Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00795 ATGGAACAGATTGCAGAGCTGAGGAAGAGGCTTGGAGTTCTTTCTGGACGAAACTTGAAGTTTTGCACTGATGGTTGCCTGAGAAGATGTTTGGTGGCTCGTAATTGGAACATTGACAAAGCAAAGAAAATGGTAGAAGAAACTCTTAAATGGAGATCAACTTACAGGCCTGAAGAAATTCGTTGGCATGAAGTGGCACATGAAGGAGAGACGGGCAAAGCATTCAGAGCAAATTTTCAAGATCGACTCGGACGGGTGGTTATTATAACAAGACCTGGAATGCAGAACACGAATTCCCCTGAAGATAACGTTCGACACGTGGTCTACCTTTTGGAAAATGCCATTCTTAATCTTCCAGAAGGGCAAGAACAAATGGCCTGGTTGGTAGACTTCACTGGGTTTACATTAAACACCAATATCTCTGTCAAAGCATCTCGAGATGTCATCAACATTGTACAGAGCCACTACCCAGAGAGGCTTGGAGTTGCCTTTTTGTACAATCCTCCAAGGATTTTTCAGGCTTTCTATGAGATTATCAAGTATTTTATGGATCCAAAAACATCAAAGAAGGTAGAATTCATCTACCCGAAAGACGATCATAGCGTGGAGCTCATGAAATCCTTCTTTGACATGGAGAACCTTCCGAGTGAATTTGGAGGAAAAGCGACGTTGAAGTACGATCATCAAGAATTTTCACGAATGATGGAGATTGATGATGGGAAAACAGCCAAGTTTTGGGGGTCTGAGGAGAAAGCTTCTTGTGTTAACAATGGCTACACTAAGACAGACATGGCTACAGCATCAATTATCGTCCCGGGAGGGGAGTAA 828 42.75 MEQIAELRKRLGVLSGRNLKFCTDGCLRRCLVARNWNIDKAKKMVEETLKWRSTYRPEEIRWHEVAHEGETGKAFRANFQDRLGRVVIITRPGMQNTNSPEDNVRHVVYLLENAILNLPEGQEQMAWLVDFTGFTLNTNISVKASRDVINIVQSHYPERLGVAFLYNPPRIFQAFYEIIKYFMDPKTSKKVEFIYPKDDHSVELMKSFFDMENLPSEFGGKATLKYDHQEFSRMMEIDDGKTAKFWGSEEKASCVNNGYTKTDMATASIIVPGGE 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29218156 29219253 + BLOR15757 Blo05g00795 61229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00795 275 Gene3D - 2 263 IPR036865 -
Blo05g00795 275 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 3 269 - -
Blo05g00795 275 CDD SEC14 81 221 IPR001251 -
Blo05g00795 275 PANTHER GH16843P 3 269 - -
Blo05g00795 275 Pfam CRAL/TRIO domain 80 220 IPR001251 -
Blo05g00795 275 SMART CRAL_TRIO_N_2 23 48 IPR011074 -
Blo05g00795 275 SUPERFAMILY CRAL/TRIO N-terminal domain 2 64 IPR036273 -
Blo05g00795 275 SMART sec14_4 68 223 IPR001251 -
Blo05g00795 275 SUPERFAMILY CRAL/TRIO domain 62 234 IPR036865 -
Blo05g00795 275 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 80 226 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00795 - - - zju:107424593 416.001
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo05g00795 Blo16g00041 CCT
Blo05g00795 Blo16g00041 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00795 Blo-Chr5:29218156 Blo16g00041 Blo-Chr16:1815772 2.71E-138 dispersed
Blo02g00211 Blo-Chr2:1981216 Blo05g00795 Blo-Chr5:29218156 1.07E-22 transposed
Blo12g00698 Blo-Chr12:25246157 Blo05g00795 Blo-Chr5:29218156 1.67E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo05g00795 Blo_Chr05 FPKM 7.556685 8.514977 8.370709 8.297791 10.532926 11.708754 11.414738 14.645976 14.2304 16.003502