Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00818 ATGAGGACAGAAGTTGCGTGCGACGAGGACAGAAGCTGTGATTTGCGACGAGTCGACAACAGAGAAGCTGCGATTTGCGATGACGACGATGACTACGAATTTAGTTTGATTTCTCCTCTCATTCCGACGATCCTCATTGACTATGATCCACCGAAGATTGACTATGATCCGCAGATCGACGATGACTCTCTGCAGATCGACGACGTTCTTAAGTTATATTTCAAATATTCACGATCCGTTGCAGATCGACGACAGTATTTAACGGAAAACACCTCAAAATCTAAGGCTAGCTTCAACCCACCATTGTTGGAAGGAAGCAGAAGCAGAAGCAGAAGCAGAAGAAGAAAAAGAAGATCCAAGAAAATGGGGCGTGGAAAGATCGAGATCAAGAGGATCGAAAACTCTACAAACAGGCAGGTCACCTACTCTAAACGAAGAAATGGTATTTTCAAGAAAGCTAAAGAACTGGCTGTTCTTTGCGATGCTAAGGTCTCTCTGTTGATGTTCTCTGAAACTGGCAAGTTTCATGAGTATACCAGCCTTAACACCACAACGAAGAAGATCTACGATCAGTATCAGAGTGTTACAGGGATTGATTTGTGGAGCACGCACTATAAGAGAATGGAAGAAAACTTGAGGAGGCTGAAAGAAATCAACTACAACTTGAGGAGGGAGATCAGGCAGAGGATGGGCAAAGATTTGAACGATCTTGACTACAAGCAACTCCATAGTCTTGAGCAAAACATATCTTCTCCCTTGAAAGCCATACGCGAGCGAAAGGTTCATTTCCATAACTTCTGA 801 43.45 MRTEVACDEDRSCDLRRVDNREAAICDDDDDYEFSLISPLIPTILIDYDPPKIDYDPQIDDDSLQIDDVLKLYFKYSRSVADRRQYLTENTSKSKASFNPPLLEGSRSRSRSRRRKRRSKKMGRGKIEIKRIENSTNRQVTYSKRRNGIFKKAKELAVLCDAKVSLLMFSETGKFHEYTSLNTTTKKIYDQYQSVTGIDLWSTHYKRMEENLRRLKEINYNLRREIRQRMGKDLNDLDYKQLHSLEQNISSPLKAIRERKVHFHNF 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29833204 29837034 + BLOR15780 Blo05g00818 61252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00818 266 Gene3D - 134 202 IPR036879 GO:0003677|GO:0046983
Blo05g00818 266 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 122 261 - -
Blo05g00818 266 MobiDBLite consensus disorder prediction 109 124 - -
Blo05g00818 266 PANTHER SERUM RESPONSE FACTOR HOMOLOG 122 261 - -
Blo05g00818 266 PRINTS MADS domain signature 124 144 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 PRINTS MADS domain signature 144 159 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 PRINTS MADS domain signature 159 180 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 ProSiteProfiles K-box domain profile. 205 266 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo05g00818 266 ProSitePatterns MADS-box domain signature. 124 178 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 SUPERFAMILY SRF-like 123 216 IPR036879 GO:0003677|GO:0046983
Blo05g00818 266 MobiDBLite consensus disorder prediction 90 106 - -
Blo05g00818 266 CDD MADS_MEF2_like 123 201 IPR033896 GO:0000977|GO:0045944
Blo05g00818 266 ProSiteProfiles MADS-box domain profile. 122 182 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 SMART madsneu2 122 181 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 Coils Coil 205 225 - -
Blo05g00818 266 MobiDBLite consensus disorder prediction 90 124 - -
Blo05g00818 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 131 178 IPR002100 GO:0003677|GO:0046983
Blo05g00818 266 Pfam K-box region 202 262 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01307 Blo-Chr1:50189791 Blo05g00818 Blo-Chr5:29833204 3.73E-40 dispersed
Blo05g00818 Blo-Chr5:29833204 Blo11g00002 Blo-Chr11:10151 6.01E-29 dispersed
Blo01g01582 Blo-Chr1:55640009 Blo05g00818 Blo-Chr5:29833204 1.23E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12433 PF01486 K-box 3.70E-13 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00818 K09264 - twl:120002789 218.394