Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00824 ATGAGGACTCGGAAGGCGGTTACTCCCCCGACTAAGAAGCAGCCGGTCAGGAAATGCACGACGAAAAGCCCTTTTAATTCTTCCGGGTCGGCAAGTGGGACTCCTGTCACTCCCACCGCTGCGAAGCGCGCGACTGCTGCTAGACCGAAGCGCGCGAAGAGGGATGAAGAAGCCTCCCCCGCCACCGCAGCTGCTTCACCGGTCTCTGATTCAAAGCCCGAGGTTCCATCAGGAGAAGGCACTGAAGGATCCCTTAACATGCATGTGACACCGGGCAGGCAAGTAGTTGCTTTCACTAGATCGGCAGCGAAGAGATCAAAAGGGAACAATAAGACACTTGCTCCAGATAAATTGCCTTCCCATCAGGAACTTGAATCTGGAGCCTCAATTATCACAAGAATTGAAGATTGTAAGGAAAAGGCAGTAGTGGCTATTAAGGATGCGGAGATAATTCCTTCACATGGTTTACCTTCTGAACGGGATCCTGAATCTGGGAACACTATGAACTCAAGAATTGAAGATTCCAAACAGAAGACAGTAATGGTTGTTGAGGATGTAGAGATAATTGCTTCAGATTCACTGCTTTCTGAACAGGAACCTGAATTTAGGGACTCTATGAAATCAAGAATTGAAGAATTTAAAAAGGAGGCAGAAGTGGACGTTAAGGATGTTGAGATAATTGCTTCAGATACATTACTTTCCCAAGGAGTATGTGAATATGAAGGTCCAATGTACTCGATTATTGAAGAAGCTAAAGAGAAGGAAACACTGGACATTAAAAATATGGAGATGATTGAAGAGGACACTATTATCGATGAGGTTGGAGAATGTGTCAAGAAGGAACACACTATCATTGAGGTAGAGCTGTCTGCTGTTGAAAATGCAGGAGTTGCCAAAGAGAAGGAATCACTGGACATTAAAAATATGGAGATGATTGAAGAGGACACTATTATCGATGAGGTTGGAGAATGTGTCAAGAAGGAACACACTATCATTGAGATAGAGCTGCCTGCTGTTGAAAATGCAGGAGTTGCCAAAGAGAAGGAATCACTGGACATTAAAAATATGGAGATGATTGAAGAGGACACTATTATCGATGAGGTTGAAGAATGTGTCAAGAAGGAACACACTATCATTGAGGTAGAGCTGCCTGCTGTTGAAAATGCAGGAGATGCCAAAATAGAAGAGAGTAAGATGCAAATACAAATTACCCCCGTTGCCTGCTTTGAAGAATCTTCCATTGAAGAGAAATCTATTTGTGCAGATGTTATATTGTTGTTGGATACCGTGAAACCTGGTGAATTAACGGAGGAAGAGGCAGTGGAAGAAGATCCAGAGGAGCAAGATACTGAAGGCGTGAAGGATGAGGAAGAATTAAACGTTCTATCTTCTAATGTAAATGGAAATAACAAAGAGGACATGCTGGGAGAAGATAGTCAAATTGCAAATAGCCAGTGTTTCAGAAATGATCGAACTGAAGAATTTGTGGGGAAAGTTGACCTTGGTGAACGTGGAGAAGAGGAGATTGTAGAGGAGGATCTTCAGGAGCCAGTTGAAGAAAATGAGCCATTGGAAGAGGAACGTAGGGAGTTATCTGCAATGGCAAAGGAGCCGAAGATTGGAAAAGTTGACCTTGGTGAACATGGAGAGAAGAAGATTGAAGAGGAGAATATTCAGGAGCCTGTTGAAGAAAATGAGGCAGTGGAAGAGGAATGTAGGGAGTTATCTGCCATGGCAAAGGAGCGGAATATTAGAAAAGTTGACCTTGGTGAACATGGAGCGGAGGAGATTGAAGAGGATTATCATCCGGAGCCTGTTGAGGAAAATGAGGCATTGGAAGAGGAGCGTAGGCAGTTATCTGCCATGGCAAAGGAGCGGAAGACTAGAAAAGAACATGAAATATTTGTTGGAGGTTTGGATAGAGATGCTACTGAGGAAGACGTGAGAAAAGTTTTTGAGATAATCGGGGAGATTGTTGAAGTCAGGTTGCATAAGAATCATCCTACTAATAAGAATAAGGGATATGCATTTGTGACCTTTTCTAGTCAGGAGAATGCAAAACTGGCTCTAGCAGAAATTAAAAACCCTATTATTGCTGGAAAAAGATGTGGCACTGCACCTAGCGAGGACAATAACACATTATTTTTGGGTAATATCTCCAATACATGGACAAAAGAAGCTATTAAACAAAAGTTGAAGGAGTGTGGCCTTGAAGGTTTTGAGAAGATAACACTTGTATTAGATGTTCAACATGAAGGGTTAAGCCGAGGATTTGCATTTGAGCCTGACCCAGAAGTTATGGCCCAGGTGAAATCTGTATTCATGGATGGTATCCCGCCGAATTTGGGTGAAGCACAAGTTAGAGAAAGATTAAAAGGTTATGGCGATATTGTGCGGATTGTTTTGTCACGAAATATGCCAACAGCAAAAAGGAAGGATTTTGGATTTGTGGATTTTTCTACCCACAAAGATGCTGTTGCATGTGTTCAAGTTTTAAATAATACAGAATTTGGTGATGGAAATTTAAAGACAAAAATTAAGGCAAGGCTTTCAAATCCAATGCCAAAAACTCAGGCTGTGAAAGGTGGAATGTGTGGAGGATTTCGAGTTGGTAATGGTAATGGTGGACCATTTCCAAAATTTGGGAAGAGTTTTGAACGAGGTGGAAATTCATTTAATCATCCACACTACATGCGTGGGCGTGGTTTCAATCAAGGTGGACGATTTCAAAGGGGCAGAATAGGTTTTCAAAACAAATTTGAATATGAGAATCCTTATCCGGAGTTCAACAGAAGACAAAATACAGGTGGGAGAAGGGGATCAATTAGAGGAGGTCATTTTAGCTCTGTGAGAGGTGGTGCAGTGGCTGCCTCATCAAGACCTCTTCTTGAGGGGTGGCGGGATCCTCCTGGCAGGGAATATGGATTTGAAATCCCTCTTAGGCAACAACCATATACTTCAGAGGCACACCATGACAGATCATATTTGAGACCACACTTCGATGCTCAATATAATCACATTGACAATATTCATGGGACAAAACGTCCATATTCTATGATGGAGCATGGTCCTGTAGATTACATAGAGCCTGGCAGAGTTCGCCCGCAATTTGATTATTCTAATCCAATAGGTCCATTTCAAGGAAACCATTACCAAGGATATTGTCATGGAAAAGAAGTGGCTAACTTCTGGAAAAAAGAATTTGAAGTTTTATATGATGCAGTTTCTCTTCCTGTAGTTTATCCTTGTAGTCACTCAAGATTGTCCATAACAAGCTCTGCTTATGTGGTAGGAGTGAATGGGTCCTTAGGTAGATCAATTTGGGAACTACGGTGTGGGCCTTAG 3345 42.21 MRTRKAVTPPTKKQPVRKCTTKSPFNSSGSASGTPVTPTAAKRATAARPKRAKRDEEASPATAAASPVSDSKPEVPSGEGTEGSLNMHVTPGRQVVAFTRSAAKRSKGNNKTLAPDKLPSHQELESGASIITRIEDCKEKAVVAIKDAEIIPSHGLPSERDPESGNTMNSRIEDSKQKTVMVVEDVEIIASDSLLSEQEPEFRDSMKSRIEEFKKEAEVDVKDVEIIASDTLLSQGVCEYEGPMYSIIEEAKEKETLDIKNMEMIEEDTIIDEVGECVKKEHTIIEVELSAVENAGVAKEKESLDIKNMEMIEEDTIIDEVGECVKKEHTIIEIELPAVENAGVAKEKESLDIKNMEMIEEDTIIDEVEECVKKEHTIIEVELPAVENAGDAKIEESKMQIQITPVACFEESSIEEKSICADVILLLDTVKPGELTEEEAVEEDPEEQDTEGVKDEEELNVLSSNVNGNNKEDMLGEDSQIANSQCFRNDRTEEFVGKVDLGERGEEEIVEEDLQEPVEENEPLEEERRELSAMAKEPKIGKVDLGEHGEKKIEEENIQEPVEENEAVEEECRELSAMAKERNIRKVDLGEHGAEEIEEDYHPEPVEENEALEEERRQLSAMAKERKTRKEHEIFVGGLDRDATEEDVRKVFEIIGEIVEVRLHKNHPTNKNKGYAFVTFSSQENAKLALAEIKNPIIAGKRCGTAPSEDNNTLFLGNISNTWTKEAIKQKLKECGLEGFEKITLVLDVQHEGLSRGFAFEPDPEVMAQVKSVFMDGIPPNLGEAQVRERLKGYGDIVRIVLSRNMPTAKRKDFGFVDFSTHKDAVACVQVLNNTEFGDGNLKTKIKARLSNPMPKTQAVKGGMCGGFRVGNGNGGPFPKFGKSFERGGNSFNHPHYMRGRGFNQGGRFQRGRIGFQNKFEYENPYPEFNRRQNTGGRRGSIRGGHFSSVRGGAVAASSRPLLEGWRDPPGREYGFEIPLRQQPYTSEAHHDRSYLRPHFDAQYNHIDNIHGTKRPYSMMEHGPVDYIEPGRVRPQFDYSNPIGPFQGNHYQGYCHGKEVANFWKKEFEVLYDAVSLPVVYPCSHSRLSITSSAYVVGVNGSLGRSIWELRCGP 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29987304 29992565 - BLOR15786 Blo05g00824 61258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00824 1114 Gene3D - 706 760 IPR012677 -
Blo05g00824 1114 MobiDBLite consensus disorder prediction 522 553 - -
Blo05g00824 1114 MobiDBLite consensus disorder prediction 435 454 - -
Blo05g00824 1114 Coils Coil 609 629 - -
Blo05g00824 1114 SUPERFAMILY RNA-binding domain, RBD 763 875 IPR035979 GO:0003676
Blo05g00824 1114 MobiDBLite consensus disorder prediction 1 124 - -
Blo05g00824 1114 Gene3D - 551 705 IPR012677 -
Blo05g00824 1114 MobiDBLite consensus disorder prediction 14 39 - -
Blo05g00824 1114 Gene3D - 761 868 IPR012677 -
Blo05g00824 1114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 761 1052 - -
Blo05g00824 1114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 599 760 - -
Blo05g00824 1114 PANTHER NUCLEOLIN-LIKE ISOFORM X1 761 1052 - -
Blo05g00824 1114 PANTHER NUCLEOLIN-LIKE ISOFORM X1 599 760 - -
Blo05g00824 1114 SMART rrm1_1 633 706 IPR000504 GO:0003723
Blo05g00824 1114 SMART rrm1_1 772 845 IPR000504 GO:0003723
Blo05g00824 1114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 634 701 IPR000504 GO:0003723
Blo05g00824 1114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 773 841 IPR000504 GO:0003723
Blo05g00824 1114 CDD RRM_SF 773 843 - -
Blo05g00824 1114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 632 710 IPR000504 GO:0003723
Blo05g00824 1114 SUPERFAMILY RNA-binding domain, RBD 633 760 IPR035979 GO:0003676
Blo05g00824 1114 MobiDBLite consensus disorder prediction 509 553 - -
Blo05g00824 1114 CDD RRM_SF 634 702 - -
Blo05g00824 1114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 771 853 IPR000504 GO:0003723
Blo05g00824 1114 MobiDBLite consensus disorder prediction 437 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00824 - - - qsu:111996643 536.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00341 Blo-Chr1:4048560 Blo05g00824 Blo-Chr5:29987304 5.77E-79 dispersed
Blo05g00824 Blo-Chr5:29987304 Blo18g00646 Blo-Chr18:11570892 5.27E-10 dispersed
Blo05g00824 Blo-Chr5:29987304 Blo08g00046 Blo-Chr8:405232 1.46E-28 transposed
Blo05g00824 Blo-Chr5:29987304 Blo14g00233 Blo-Chr14:2045686 1.32E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1092 . . Bda04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1674 Cone9ag1595 . . . . Blo05g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017281 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 6