Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00020 ATGGGGAAGAAGCAGCACAGTAAAGATCGGATGTACATTACCAAAACTGAGTGGGCTACTGAATGGGGTGGCGCCAAATCCAAAGATATGCAAACCCCTTTTAAACGTCTTCCCTTCTACTGCTGCACGCTGACATTCACGCCGTTTGAAGACCCTGTGTGTACGGCCGATGGCAGTGTCTTTGATGTCATGAACATAATTCCTTATATCCGTAAGTATGGCAAACATCCAGTCACTGGAGTTCCACTGAAGCAGGTGGATCTCATCCCCCTAACTTTCCACAAGAATTCCGAAGGTGAGTATCATTGTCCAGTACTAAACAAGGTTTTTACAGAATTTACACACATAGTTGCTGTGAAGACCACAGGAAATGTCTTTTGCTATGAGGCAATCAAAGAATTAAATATTAAGACAAAGAACTGGAAGGAGCTCCTTACTGATGAATCATTCACTAGGGAAGACCTTATCACAATTCAGAATCCTAATGCCATTGACAGCAAGGCCCTTCTGGGGTTTGATCATGTAAAAAATAATCTGAAAGTTGAGGATGAAGAACTAAAGAAAATGAGTACAGATCCTGCCTATAATATTAACGTATCTGGAGATATCAAGCAGATGCTGGAGGAGCTTGGAACTGCAAAAGGAAAGGAAACTGCTCTTCATGGAGGAGGTGGTAACAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTTCCATTTTAGCTGCAAGATCAAATATTAAAGAGGATTTGAACTCAAATGAAGAGGTTAATCCCCGCCAATCATACAGTATTGTAGATGCTGCATCTGCTTCTGTTCACGGTAGAAGTGCTGCTGCTGCTAAAGCAGCATCAAGTGATAAAACTGCCGCTAGGATAGCTATGCACATGGCAGGTGAAAGAGCACCTGTTAATGCCAAGATGGTAAGAAGTCGCTATACAACTGGTGCTGCTTCACGGTCCTTTACTTCCACATCCTATGATCCTGTTACTATAAACGAATTTGAATACATAAAAGTTGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCATACCACACATGGAGATTTGAATATTCAGTTGCATTGTGATATTTCACCTAGAGCTTGTGAGAACTTCATCACTCTTTGTGAGCGTGGTTATTATGACGGAGTAGCTTTCCATAGAAGCATTCGTAATTTCATGATTCAAGGTGGTGATCCAACTGGAAGTGGGAGAGGAGGAGAATCTATTTGGGGAAAGCCATTTAAAGATGAATTCAACTCTAAGTTGGTTCACTCTGGGCGAGGTGTAGTCAGTATGGCAAACAGTGGTCCTCACACGAATGGTTCTCAGTTCTTTATCCTTTACAAATCTGCAAATCACTTAAACTTCAAGCATACAGTATTTGGTGGAGTTGTAGGTAACTTGACTACTCTGGCAGCCATGGAAAAGGTTCCAGTCGATGATGATGACCGACCTATGGAAGAGATTAAAATAACAAGTGTCACAATTTTTGTCAATCCTTACACAGAACCCGACGAAGAAGAGGAAAAAAAGGCAAAAGAAGAGGAGAAAGCTCTGGATGAAGATAATGATAAAGTTGGATCATGGTATAGTAATCCCGGCACGGGAGCATCAGAAACCCAAGCGGTAGGCAGTGGCGGTGCGGGTGTTGGCAAATACTTGAAAGCTAGAAATGGCAAAGCTGAATTTTCCAATGTTGAGGCAAGTAGTATAACAAAAAAGAGAAAAGTTGGCGTCTCCTCTGCAGAATTCAAAGACTTCGCGTCATGGTAA 1782 41.86 MGKKQHSKDRMYITKTEWATEWGGAKSKDMQTPFKRLPFYCCTLTFTPFEDPVCTADGSVFDVMNIIPYIRKYGKHPVTGVPLKQVDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAIKELNIKTKNWKELLTDESFTREDLITIQNPNAIDSKALLGFDHVKNNLKVEDEELKKMSTDPAYNINVSGDIKQMLEELGTAKGKETALHGGGGNKAQKERAAALASILAARSNIKEDLNSNEEVNPRQSYSIVDAASASVHGRSAAAAKAASSDKTAARIAMHMAGERAPVNAKMVRSRYTTGAASRSFTSTSYDPVTINEFEYIKVEKNPKKKGYVQLHTTHGDLNIQLHCDISPRACENFITLCERGYYDGVAFHRSIRNFMIQGGDPTGSGRGGESIWGKPFKDEFNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGNLTTLAAMEKVPVDDDDRPMEEIKITSVTIFVNPYTEPDEEEEKKAKEEEKALDEDNDKVGSWYSNPGTGASETQAVGSGGAGVGKYLKARNGKAEFSNVEASSITKKRKVGVSSAEFKDFASW 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 395409 398964 - BLOR16603 Blo06g00020 61313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00020 593 MobiDBLite consensus disorder prediction 531 545 - -
Blo06g00020 593 MobiDBLite consensus disorder prediction 506 527 - -
Blo06g00020 593 SUPERFAMILY Cyclophilin-like 348 510 IPR029000 -
Blo06g00020 593 Coils Coil 508 528 - -
Blo06g00020 593 Gene3D - 329 513 IPR029000 -
Blo06g00020 593 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Blo06g00020 593 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 348 498 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Blo06g00020 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 446 458 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 362 377 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 459 474 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 431 446 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 388 400 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 590 IPR044666 -
Blo06g00020 593 SUPERFAMILY RING/U-box 37 105 - -
Blo06g00020 593 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 590 - -
Blo06g00020 593 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 383 400 IPR020892 GO:0003755|GO:0006457
Blo06g00020 593 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 352 499 IPR002130 GO:0000413|GO:0003755
Blo06g00020 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Blo06g00020 593 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Blo06g00020 593 CDD cyclophilin_RING 348 506 - -
Blo06g00020 593 MobiDBLite consensus disorder prediction 505 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01459 Blo-Chr1:53712756 Blo06g00020 Blo-Chr6:395409 1.29E-44 dispersed
Blo03g01057 Blo-Chr3:36941150 Blo06g00020 Blo-Chr6:395409 5.02E-35 dispersed
Blo06g00015 Blo-Chr6:357041 Blo06g00020 Blo-Chr6:395409 1.46E-83 dispersed
Blo06g00020 Blo-Chr6:395409 Blo16g00624 Blo-Chr16:24949487 1.92E-40 dispersed
Blo06g00019 Blo-Chr6:381516 Blo06g00020 Blo-Chr6:395409 1.46E-12 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00020 K10598 - gmx:100819923 983.015