Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00028 ATGGGATTCTCTCTTACATCTTCTTCCTCTTCTTCAAATCTTCTTAAAAATCAACAAATACACCCTTCTTCTTCTTCGTCGTCTTCCGCCTTTCTTCCGCCTTCAAACCTTTTCCTTTCTCCATCACAGCTCAACTATGGCGGTTTCTGCGATGGACCGGTTGCCAGTGAAAACGGAGGCTTCTACTCTCCTTTGTCTTTGATGCCTCTTAATTCTGATGGATCTCTATGTCTAATGGAAGCTCTCACCAGTCTCAAGTCTCCGAAGTTGGAAGATTTCTTTGGTGGTGCAACAATGGCCGCCCATCACTATGAAGGTCACAGCCATCAAAATGACGAGCAGATTGAAACCCAGAACTTGAGTTACTATTCTGGGCTTTTTCAAGAACCAAGAATGCGTCAGATTGGTGAGTGCAATCTGCAGAGACCAACGATGGCGGAAAATGATGCGTCTGGTTTGAAAAACTGGGTTCTTGCAATGAGTCCGAGCTCTCAATCGAGCTGCGTGACTGGTTCACAGCTACTCTCATCTTCTGCTACTGACTGTATAGCCATGGAGACGAAGAAAAGAGGAGCTGAGAAAATGGGTCAAAAGCAAGTTGTTCATCGGAAATCGTTGGATACATTTGGGCAAAGAACTTCGCAGTATAGAGGCGTTACAAGGTCACACAGGTGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGTTGTAAGAAAGAGGGACAAAGTAGGAAAGGAAGACAAGGTGGGTACGATATGGAAGAGAAGGCTGCTAAGGCTTATGATCTTGCTGCCATTAAATATTGGGGACCCTCAACTCACATTAACTTCCCTGTGGAAACTTACCAGAAAGAGATGGAGGAGATGAAGAACATGACAAGACAGGCGTATGTCGCTCATCTTAGAAGAAAGAGTAGTGGATTCTCGAGGGGAGCTTCCATTTACAGAGGAGTGACAAGACACCATCAACATGGAAGATGGCAAGCTCGGATCGGAAGAGTTGCTGGAAATAAAGATCTTTACCTAGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCCTACGACGTTGCCGCCATTAAATTCAGAGGCTTAAACGCTGTGACCAACTTCGACATTGCAAGATACGAAGTGGAGAGGATAATGGAGAGCAATACCCTCCTCGCTGGAGACCTAGCGAGGCGTGGTAAGGAAATGGAAGCTGGAAAAGAGCCGAGTATCAACGGAGAAGAGGACGTGGGTTTGATCTTGCAGCAGAGCTCTAATGGCGGCGAGAATATGGGGAGCCATCATCCGTCCTCTCAGCTTCCAAGCTTGGAAAAATTTGCACATTCGATTTCCCCAGTTTTTGCTGCTTGGACAGATGCATGA 1374 46.0 MGFSLTSSSSSSNLLKNQQIHPSSSSSSSAFLPPSNLFLSPSQLNYGGFCDGPVASENGGFYSPLSLMPLNSDGSLCLMEALTSLKSPKLEDFFGGATMAAHHYEGHSHQNDEQIETQNLSYYSGLFQEPRMRQIGECNLQRPTMAENDASGLKNWVLAMSPSSQSSCVTGSQLLSSSATDCIAMETKKRGAEKMGQKQVVHRKSLDTFGQRTSQYRGVTRSHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAAKAYDLAAIKYWGPSTHINFPVETYQKEMEEMKNMTRQAYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDIARYEVERIMESNTLLAGDLARRGKEMEAGKEPSINGEEDVGLILQQSSNGGENMGSHHPSSQLPSLEKFAHSISPVFAAWTDA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 526846 528895 + BLOR16611 Blo06g00028 61321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00028 457 CDD AP2 314 375 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 SUPERFAMILY DNA-binding domain 214 281 IPR016177 GO:0003677
Blo06g00028 457 SUPERFAMILY DNA-binding domain 314 374 IPR016177 GO:0003677
Blo06g00028 457 Gene3D AP2/ERF domain 315 375 IPR036955 GO:0003700|GO:0006355
Blo06g00028 457 Gene3D AP2/ERF domain 214 281 IPR036955 GO:0003700|GO:0006355
Blo06g00028 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 152 422 - -
Blo06g00028 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 1 109 - -
Blo06g00028 457 CDD AP2 214 280 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 Pfam AP2 domain 315 365 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 Pfam AP2 domain 215 271 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 152 422 - -
Blo06g00028 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 109 - -
Blo06g00028 457 SMART rav1_2 215 285 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 SMART rav1_2 315 379 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 ProSiteProfiles AP2/ERF domain profile. 215 279 IPR001471 GO:0003700|GO:0006355
Blo06g00028 457 MobiDBLite consensus disorder prediction 1 29 - -
Blo06g00028 457 ProSiteProfiles AP2/ERF domain profile. 315 373 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00028 Blo-Chr6:526846 Blo12g00998 Blo-Chr12:27991434 7.59E-156 dispersed
Blo06g00028 Blo-Chr6:526846 Blo01g01486 Blo-Chr1:54305900 2.60E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12441 PF00847 AP2 1.10E-07 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00028 K09285 - csin:114276235 535.798