Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00041 ATGGCCTCTGGCCATTCGCTGGAAATAGAGCCCGACGAGAGAGAGAACAGACAGCGAGAGAGGGAGAGGGAGATTGACGAAGGAGGCCGGCGATCGACGATGAGGGCGAGCCTTTTTCGTAGCGAGGGGACGACTCCGACGGACTCGAGTTCATTCCGGCTTGCTGTGCGTCACGGGTTACGAGCTAGGGCTCGATTTTATGGGTGCGGGATGGTTCGACGGCCATGGCTTCGGGTCATTGGTGCTACAGCGGTGTCCGACGAATGTGCAGCCAGAAATTTGTGGGGCGCTCACGGGCTACGGCGAGGAGGCAGTGGACCGACGGTGATGAATGGCTGTGGCAGGGGGAGCTTCGGTTCGCTGGGACTCGGCTGGATACAAGGATTGTCTGGCATGCAGAGTGCAAAACTCTGCCTTTCCAGGAATGGCAGAGTGTTGTTGGCTGGAGGTTTTGACGATTTCATGGACTTTGAAACTATTCCTGGTAATAGTGCTCTGCTGGTAAGAAGAGTAGTCGTCATCGAGGCTCAAATGGAGGAAGATTCTTCGTTTTTTGATCGATATTCTCTTGACTACAATCTGGATGAGTTGAGTTTTCAGTCAGTTTCTACTGAAAGCTACCCAAACAGCACGACTAGCTTCAATGGCTGCTCAGCTGCAACGTTTCCTCCATTAATAGCAGAATCTGAAAAACCAGCAAAGCTGCTCAAATCCAACGGCTGGAAACCATCGAAGCCCGCTTCTTCTCCCTCCTCTCAAATCATCTCCTTCGGAAATTCAAATTCGTCTCAGAAATATTCTGGTTTAGACACTACTTTAAAGCCTAATTTTGAGATGACCACCTATGCTGCTCCCGTCGACCATGGATCGAGGGAGAACCTCCAGAGTCTGACGAAAAATGAAAGAAGTAGGAGGGGTTTTGGGGCAGTCAGCAGAAGCCCTTTGCTTGCTGAAGATCATGTTTTAGCTGAGAGAAAGAGGAGAGAGAAACTCAGCCAGAGGTTTGTCTCTCTTTCTGCTCTAATTCCTGGCCTAAAGAAGAATGATAAGGCTTCTGTTCTTGGAGACGCCATTCAACACGTGAAGCAGCTGCAGGAACGTTTGAGGAAGCTGGAGGAACAAACAACGAAGAAGACGATGGAATCCGTGGTTTTGGTGAAGAAAGCTCGTCTTTTTGCAGATGATGATTCTTCATCGGGCGAACAGTCTACTGGCTTTTCCGACCAACGCCTCCCGGAAATCGAAGCAAGAGTTTCCGGCAAGGACGTTCTCGTTCGAATTCACTGTGAAAAACAAAAGGGATTGTTGTCACATATATTGAACGAAGTGCAGAAGCTTCATCTGTCAGAAGTTCACAGCAGTGTCTTCAAATTTGGGACCTCTACTCTTGATATCACCATTGTTGCTAAGATGGAAGATGGATTCTGTATGACAGTGAAGGAAATAGCGAAGAATCTGAGAACCGCTTTGCTGAACTTCATTTCTGTTGGAGTTTGA 1497 48.7 MASGHSLEIEPDERENRQREREREIDEGGRRSTMRASLFRSEGTTPTDSSSFRLAVRHGLRARARFYGCGMVRRPWLRVIGATAVSDECAARNLWGAHGLRRGGSGPTVMNGCGRGSFGSLGLGWIQGLSGMQSAKLCLSRNGRVLLAGGFDDFMDFETIPGNSALLVRRVVVIEAQMEEDSSFFDRYSLDYNLDELSFQSVSTESYPNSTTSFNGCSAATFPPLIAESEKPAKLLKSNGWKPSKPASSPSSQIISFGNSNSSQKYSGLDTTLKPNFEMTTYAAPVDHGSRENLQSLTKNERSRRGFGAVSRSPLLAEDHVLAERKRREKLSQRFVSLSALIPGLKKNDKASVLGDAIQHVKQLQERLRKLEEQTTKKTMESVVLVKKARLFADDDSSSGEQSTGFSDQRLPEIEARVSGKDVLVRIHCEKQKGLLSHILNEVQKLHLSEVHSSVFKFGTSTLDITIVAKMEDGFCMTVKEIAKNLRTALLNFISVGV 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 985921 997077 - BLOR16624 Blo06g00041 61334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00041 498 Coils Coil 354 381 - -
Blo06g00041 498 MobiDBLite consensus disorder prediction 236 259 - -
Blo06g00041 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
Blo06g00041 498 SMART finulus 321 370 IPR011598 GO:0046983
Blo06g00041 498 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 175 493 - -
Blo06g00041 498 Pfam Helix-loop-helix DNA-binding domain 320 365 IPR011598 GO:0046983
Blo06g00041 498 MobiDBLite consensus disorder prediction 7 33 - -
Blo06g00041 498 PANTHER BHLH TRANSCRIPTION FACTOR 175 493 - -
Blo06g00041 498 CDD bHLH_AtNAI1_like 316 388 - -
Blo06g00041 498 MobiDBLite consensus disorder prediction 1 50 - -
Blo06g00041 498 Gene3D - 317 386 IPR036638 GO:0046983
Blo06g00041 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 382 IPR036638 GO:0046983
Blo06g00041 498 MobiDBLite consensus disorder prediction 242 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00041 Blo-Chr6:985921 Blo02g00993 Blo-Chr2:38538853 1.62E-18 dispersed
Blo06g00041 Blo-Chr6:985921 Blo06g00042 Blo-Chr6:1061144 0 tandem
Blo16g00325 Blo-Chr16:8400805 Blo06g00041 Blo-Chr6:985921 1.00E-76 wgd
Blo05g00723 Blo-Chr5:25340011 Blo06g00041 Blo-Chr6:985921 1.22E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12444 PF00010 HLH 5.40E-09 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00041 - - qsu:112005400 285.419