Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00064 ATGGAGTTCAACGATCAAGGGGAGCATGACGAAGAGATGGCGAGCTACGACTCGCTTGGGAACTCGGTGTCGAGTGTGAAAATAGCGAACTTGGAAGCTCTGGCTCAGCAGAATAGGAAGCTGAGGTACAGAGAGTGCCTGAAGAATCACGCTGTCGGCATCTGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTGGCGGAGCAGAAGGAACGCTCGACGGACTCAAATGCGCTGCCTGCAACTGCCACCGTAATTTCCACAGGAAAGAGACGGAAGGCGGAATCGGAGTCGGAGAGCATTTCCTTCTCGCCCAACACCCTCACCTGCAGTTCTCGCCTCACTACCGAACTCCGGCGGGAAACCTTCACGTGGATCATCACCAGAGCCTGCTGGCGCTATCGTCGGCTTCTGGCGGAGGCGGAATCCATAGCCGGGAGGTTCAGGAGGACATTCCCAACCCCAACGACGGCCATGGTGGCGGCCGAAGCCGAGGGTTCGGGAAGAAAAGATACAGATCAAAGTTTAGTCAAGATCAGAAAGAGAGACTGTTGGACTTAGCAGAAAGAGTCGGATGGAGGATTCAGAAAGACGATGAAGCCATTGTTCGGCAGTTCTGCAACCAAACAGGGGTGAAGCGTCAGAGACATGAGAGCCAATCAGCCCATACAGCAGCCTCTCCATCGTCCTCTAAAGCAACAGAAGCCACATACTACTTCACCAATGTCGTAAGCCGCAAACCTGCTCCTCCAGCCGTGCCTACCGAGGTGCAGGAGACCAATGAGTCAGAGCCTCCACCCCTTAGAACTATGCGCATGTCTCAGGATTTGATAGACATCTTCAAGAAGTATGTTGCCCCAAATACTCAGAAGAACATGGAGATGTGCGCAGTTCTTTCAGGGAAAGCTGATCAGCGATGA 924 54.11 MEFNDQGEHDEEMASYDSLGNSVSSVKIANLEALAQQNRKLRYRECLKNHAVGICGHALDGCGEFMPGGAEGTLDGLKCAACNCHRNFHRKETEGGIGVGEHFLLAQHPHLQFSPHYRTPAGNLHVDHHQSLLALSSASGGGGIHSREVQEDIPNPNDGHGGGRSRGFGKKRYRSKFSQDQKERLLDLAERVGWRIQKDDEAIVRQFCNQTGVKRQRHESQSAHTAASPSSSKATEATYYFTNVVSRKPAPPAVPTEVQETNESEPPPLRTMRMSQDLIDIFKKYVAPNTQKNMEMCAVLSGKADQR 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1846331 1849592 - BLOR16647 Blo06g00064 61357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00064 307 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 42 92 IPR006456 -
Blo06g00064 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 26 216 - -
Blo06g00064 307 Gene3D - 157 219 - -
Blo06g00064 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 216 - -
Blo06g00064 307 MobiDBLite consensus disorder prediction 137 176 - -
Blo06g00064 307 Pfam ZF-HD protein dimerisation region 41 93 IPR006456 -
Blo06g00064 307 SUPERFAMILY Homeodomain-like 157 216 IPR009057 -
Blo06g00064 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Blo06g00064 307 MobiDBLite consensus disorder prediction 247 270 - -
Blo06g00064 307 MobiDBLite consensus disorder prediction 212 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00064 - - - vri:117919209 259.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00064 Blo-Chr6:1846331 Blo16g00046 Blo-Chr16:1874806 4.78E-44 dispersed
Blo17g00820 Blo-Chr17:26498070 Blo06g00064 Blo-Chr6:1846331 7.81E-39 transposed
Blo05g00749 Blo-Chr5:26862729 Blo06g00064 Blo-Chr6:1846331 4.36E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12448 PF04770 ZF-HD_dimer 1.40E-26 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00064 Blo_Chr06 FPKM 87.610847 97.412346 84.876129 87.376617 96.279793 76.907585 96.771721 85.433228 84.951096 97.395729