Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00124 ATGACGGGAGGAGGTTCGTCAGGGAGGATGCCTACTTGGAGAGAGAGGGAAAATAACAAGAGGAGAGAAAGAAAAAGGAGAGCCATTGCTGCTAAGATTTATACTGGTTTAAGAGCTCAGGGAAACTATAAGCTTCCTAAGCACTGTGATAATAACGAGGTCTTGAAAGCTCTGTGTGCTGAAGCTGGTTGGGTCGTCGAAGAAGATGGAACTATCTACAGAAAGGGATGCAGGCCTCCAATGGAGAAAATTGCAGCAAATTTGGCAAACAGGAATGCTTGTTCATCTCTTCAACCAAGTCCTCAATCTTCCTCCTTCCCTAGCCCTGCACCATCCTACCCTGCAAGTCCTTCCTCATCTTCATTTCCTAGCCCAACCCCATTCGATCAAAATCCTTCCACTTATCTCCTTCCATTTCTTCAAAACATAGCTTCAATTCCTACAAATCTCCCTCCTCTGAGAATATCAAACAGCGCCCCTGTAACTCCACCTCTTTCATCTCCAACCTCAAGAGGCTCCAAGCGGAAACCCGATTGGGAGTCCCTCTCTAATGGATCATTATCCTCTTTTCGCCACCCCCTTTTTGCCGTCTCTGCTCCGGCCAGCCCCACAAGGCAGCATCACCTTCCTCCGGCAACAATTCTGGAGTGTGACGAGTCAGATGCATCCACAGTTGACTCCGGCAGGTGGGTTAGTTTTCAGACCACTGGACCTGCCGCTATTCCTACTTCGCCTACGTTCAATTTGATGAAGCCATTGATACAACAGTGTTCTTTACAAGACGCTGTTCAGGGACGAGGGCCAATGTTTTTGGATTTTGAATTCGAAAGTGGCAAAGTGAAGCCATGGCAGGGTGAGAGGATTCACGAGGTTGGTGTTGACGATTTAGAGCTTACCCTTGGAGGTGGCAAGACTCTTGGTTGA 924 47.94 MTGGGSSGRMPTWRERENNKRRERKRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCAEAGWVVEEDGTIYRKGCRPPMEKIAANLANRNACSSLQPSPQSSSFPSPAPSYPASPSSSSFPSPTPFDQNPSTYLLPFLQNIASIPTNLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESLSNGSLSSFRHPLFAVSAPASPTRQHHLPPATILECDESDASTVDSGRWVSFQTTGPAAIPTSPTFNLMKPLIQQCSLQDAVQGRGPMFLDFEFESGKVKPWQGERIHEVGVDDLELTLGGGKTLG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4857397 4858669 + BLOR16707 Blo06g00124 61417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00124 307 MobiDBLite consensus disorder prediction 104 121 - -
Blo06g00124 307 MobiDBLite consensus disorder prediction 94 127 - -
Blo06g00124 307 MobiDBLite consensus disorder prediction 155 185 - -
Blo06g00124 307 MobiDBLite consensus disorder prediction 1 25 - -
Blo06g00124 307 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 131 IPR008540 -
Blo06g00124 307 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 305 IPR033264 GO:0003700|GO:0006351|GO:0009742
Blo06g00124 307 MobiDBLite consensus disorder prediction 155 172 - -
Blo06g00124 307 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00124 K14503 BZR1_2; brassinosteroid resistant 1/2 - vvi:100249673 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01552 Blo-Chr1:55283183 Blo06g00124 Blo-Chr6:4857397 1.33E-93 dispersed
Blo06g00124 Blo-Chr6:4857397 Blo10g00726 Blo-Chr10:22920767 2.21E-34 dispersed
Blo06g00124 Blo-Chr6:4857397 Blo11g00263 Blo-Chr11:2124865 6.86E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g01552 . 122 407 BZR Transcription Factor Family AT1G75080 66.2 4.0e-90 328.6
Blo06g00124 . 28 307 BZR Transcription Factor Family AT1G75080 55.1 6.2e-75 278.1
Blo01g01552 . 122 405 BZR Transcription Factor Family AT1G19350 64.9 1.1e-90 330.5
Blo06g00124 . 28 304 BZR Transcription Factor Family AT1G19350 57.8 5.3e-74 275.0
Blo06g00124 . 2 301 BZR Transcription Factor Family AT3G50750 56.5 3.3e-74 275.4
Blo01g01552 . 90 404 BZR Transcription Factor Family AT3G50750 50.5 2.1e-60 229.6
Blo11g00263 BCT 112 363 BZR Transcription Factor Family AT4G18890 55.6 5.3e-56 214.5
Blo07g00988 . 76 286 BZR Transcription Factor Family AT4G18890 50.5 7.9e-44 174.1
Blo10g00726 . 173 377 BZR Transcription Factor Family AT4G18890 52.6 1.9e-42 169.5
Blo11g00263 BCT 1 363 BZR Transcription Factor Family AT1G78700 62.1 3.4e-102 368.6
Blo01g00870 BCT 1 355 BZR Transcription Factor Family AT1G78700 55.7 3.9e-98 355.1
Blo10g00726 . 1 377 BZR Transcription Factor Family AT1G78700 60.4 6.6e-98 354.4
Blo07g00988 . 28 286 BZR Transcription Factor Family AT1G78700 60.8 2.3e-66 249.6
Blo06g00124 . 28 201 BZR Transcription Factor Family AT4G36780 74.6 1.7e-59 226.5
Blo01g01552 . 122 301 BZR Transcription Factor Family AT4G36780 57.0 5.7e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12451 PF05687 BES1_N 3.50E-60 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00124 Blo_Chr06 FPKM 27.808823 29.984657 26.579056 28.521484 35.806416 43.635902 44.672543 33.540779 34.081909 36.886238