Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00125 ATGGATGATCAAACTGAAGATCAGATGGTACTTCTCTCTCAGATGTACCCGGAAGAGTCCCATATAGTAACTCAACAAGGCGTAGGACAGGGAAGACTAAAACGACGTCGTAAGAAGAGCAAACCAGAGAATGAGATGGCGGGGTTGAGGAAGAGAAAACTGAACGCAGAGCAACTGACTCTTCTGGAAATGAACTTTGTTAATGAACACAAACTGGAAACTGAGAGAAAATATCGATTGGCTTCAGAACTGGGTCTTGATCCTCGGACAGTTTCAGTTTGGTTTCAGAACAGAAGGGCTCGTTGGAAGAGCAAGAAAATGGAGGAAGAATACTGTTCTTTGAAGAAAGCTCATGAATCTGTTGTTGTACAGAATTCACAGCTTGAATCTGAGATAATGAAACTGAAGGAGAAACTGTCCAAGGCAGAGATGGAGATCAAACGGCCGTCAAGCAACAGTCCAAGCTTGTCGTTGACAATGGACGTCGTGGATGAAGCACCATTTATTGGAGAATTTGAATTTGAAGAAAATATTTATGCTGCTGGAGATTGGAACCGAGAGAGTGCAATCGGCGATTCGAAGTTGCGACGACGACTGCGAGGGGAGAGGAACCGAGAATCGCCGGTTCTAGGTTTGGGTCCGATTCCCATCGGTTTCGGGTTCGGTACCTACTTCTCGGAACCGAGAACCGACTATTCAGTTCCGGACGGTCCGGAACCAAACCCGAAACCCGAATTGCCCAGCCCTAGGAATTGGCAGAGAGTGTCCCCTTCTGGTGTTGATATACTGAGTTGA 795 46.42 MDDQTEDQMVLLSQMYPEESHIVTQQGVGQGRLKRRRKKSKPENEMAGLRKRKLNAEQLTLLEMNFVNEHKLETERKYRLASELGLDPRTVSVWFQNRRARWKSKKMEEEYCSLKKAHESVVVQNSQLESEIMKLKEKLSKAEMEIKRPSSNSPSLSLTMDVVDEAPFIGEFEFEENIYAAGDWNRESAIGDSKLRRRLRGERNRESPVLGLGPIPIGFGFGTYFSEPRTDYSVPDGPEPNPKPELPSPRNWQRVSPSGVDILS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5047383 5050819 + BLOR16708 Blo06g00125 61418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00125 264 Gene3D - 43 113 - -
Blo06g00125 264 MobiDBLite consensus disorder prediction 23 47 - -
Blo06g00125 264 Pfam Homeodomain 52 103 IPR001356 GO:0003677
Blo06g00125 264 SUPERFAMILY Homeodomain-like 51 111 IPR009057 -
Blo06g00125 264 MobiDBLite consensus disorder prediction 228 264 - -
Blo06g00125 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 6 178 - -
Blo06g00125 264 SMART HOX_1 48 109 IPR001356 GO:0003677
Blo06g00125 264 Coils Coil 118 145 - -
Blo06g00125 264 CDD homeodomain 50 106 IPR001356 GO:0003677
Blo06g00125 264 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Blo06g00125 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 178 IPR045224 GO:0003700
Blo06g00125 264 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo06g00125 Blo16g00037 CCT
Blo04g00927 Blo06g00125 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00927 Blo-Chr4:10974191 Blo06g00125 Blo-Chr6:5047383 1.62E-44 dispersed
Blo06g00125 Blo-Chr6:5047383 Blo11g00670 Blo-Chr11:7393266 1.26E-24 dispersed
Blo06g00125 Blo-Chr6:5047383 Blo16g00037 Blo-Chr16:1764352 1.95E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12452 PF00046 Homeodomain 1.60E-15 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00125 K09338 - nnu:104595754 200.675