Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00133 ATGTTACTGGAGAGCCATACAAAATTATATATTGCTACTCCCCTGTGGAATTATGAGAGCAGAATCAAAAGGGAGTTTGATCTGAGGACACAATGCTCTAATTATAAGACTTTTATTGAAATTATTCCATTGTATTTTCTCACGTGGTCACGCTTAGTACCAAGTAAAATTAGGGGCCAAGCCAAGTTCCAACCCGGTAGTGCGTCTTCATTTATAACCTCCCCAGAATACGGAGGCCTTGCTTACTTTTTGACGCCATCGGAGCGGCGGAGAGCAGGATTGTTCCGATTAAGATGTGGCGGTGCGTTTCTCGCGGTCTTACCTTCTCTTCTTCCTTCCCCTCTTCAAGGACATCGCCTCCCTCTCCTTCTTTCAGATCTCTCATTTCTCGACCTTTTTCTGACGCCTGCGGGTCGCTCTTCATACACTGTTGTTGATCATGAATACGACGCTGTCGTTGTTGGAGCGGGGGGTGCAGGGTTAAGGGCTGCTATTGGACTCTCAGAGCATGGATTCAACACTGCTTGCATTACCAAACTTTTTCCAACTCGTTCCCACACTGTTGCAGCTCAGGGTGGTATAAACGCTGCCCTGGGGAACATGACGGAAGATGACTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGCGACTGGCTGGGTGATCAAGATGCCATTCAGTACATGTGCAGGGAGGCACCAAAAGCTGTGATTGAACTTGAAAATTATGGATTGCCATTTTCTAGAACTGAAGAGGGAAAAATATATCAGCGGGCATTTGGTGGTCAGAGTCTTGACTTTGGAAAAGGTGGACAGGCATATCGCTGTGCATGTGCCGCTGACCGAACTGGCCATGCTTTGTTACATACTCTTTATGGCCAAGCTATGAAGCATAACACACAATTTTTTGTGGAGTATTTTGCTTTGGATCTCCTAATGAATAGTGATGGTAGCTGTCAAGGGGTTATAGCGTTAAATATGGATGATGGGACACTCCACCGATTCCATGCTGCCTCAACCATTCTAGCTACGGGGGGTTATGGTAGAGCATACTTCTCTGCAACCTCAGCTCACACTTGCACTGGAGATGGCAATGCCATGGTTGCACGGGCCGGGATCCCATTGGAGGATTTGGAGTTTGTGCAGTTTCATCCTACTGGTATCTATGGTGCTGGGTGTCTCATTACTGAAGGATCTCGGGGTGAAGGTGGTATTCTAAGGAATAGTGAAGGTGAGCGTTTCATGGAACGATACGCCCCAACTGCTAAGGACCTTGCTTCAAGAGATGTTGTTTCTAGATCCATGACTATGGAAATCAGGGAAGGTCGCGGCGTAGGACCCCTGAAGGACCATATCTATCTGCATCTAAATCACTTACCACCGGATGTACTCAAGGAGAGGCTTCCTGGTATCTCAGAAACTGCTGCCATTTTTGCTGGTGTAGATGTTACGAAGGAACCCATTCCTGTTTTACCTACTGTGCATTATAATATGGGTGGAGTTCCCACTAATTACCATGGAGAGGTAGTTACCATTAAAGGTGATGATCCAGATGCAGTAATTCCTGGACTAATGGCTGCCGGGGAGGCAGCATGTGCATCCGTTCACGGTGCCAACAGGCTTGGTGCAAATTCACTTCTTGACATTGTGGTTTTTGGACGAGCGTGTGCAAATAGAGTTGCAGAGATACATAGGCCAGGGGAGAAACAAAAGCCACTGGAAAGGGATGCTGGTGAGAAGACTATTGCATGGTTAGACAAATTAAGGTATTCAAATGGCTCACTACCAACTCCAAAAATCAGATTGAATATGCAGCGAATAATGCAAAATAATGCTGCTGTGTTCCGAACCCAGGAAACATTAGAAGAGGGTTGTAAATTGATTGATGATGTGTGGAAGAGCTTTCATGATGTACAGGTGAAAGACAGGAGTTTAATATGGAACTCCGACCTGATTGAGACTATAGAGTTGGAGAACCTTTTGATAAATGCATGTATTACTATGCATTCCGCCGAAGCAAGGAAAGAAAGCAGAGGAGCACATGCTCGTGAAGATTTCACGACAAGAGATGATAAGAACTGGATGAAACACACGTTGGGATATTGGGAGAATGAGGCAGTCCGGTTAGATTACAGGCCAGTTCATATGAACACGTTAGATGATGAGGTTGAAACATTCCCTCCTAAAGCTCACGTAGAATTCAATCTTTTACTCGAAATACAAGTGGTGGGAGTTAGGGGGATGGTTGAAGTGTTTGGGAGGCACCGTTCTCAAAATGTCATTTTTAAACCTGTAGTGCTGCTCCAATCTGCTGTGCGCTGCCCCACAGTTGGCGTGCTGTGGGCTCGGTTGGGGAGCTGGGGGCCCGGGTTGGGCTCAGTTGGTGCGCAGTGGGCCCAGCCCAGATGTACTGCGCCTACTGGGCCCAGTAGGCTGCTGCGGCCCAACCAAGAGAGGCTTTCAGACAGCTCCAAGCTTCCTGGAATGTACGTCGCCCTTGTTTGTGCCACCGTGGCCCGTGTTTCTCTGAGCCTTGTCCGAATTGCTGACGTGTCCCGCATTTCTCGCGACGCTGTCCGAATGCGTGCCGACGTCTTCCCTTCTGTGCACGCGGCGTGCGCGCTGCCGATGCCTATGTCTGCCTGGCATCAAAGGATGGAACACTTGGTCGTTCCACGTCTCACACCTGTACCCCTATGTGTCAACCAACAGTCACGGTTAATAATCCCCTCTCTTCATTTGACGGTTTATGAAGGGAGAGCATCTCCTTCTGTTCCACCGTCTAGGTTCACTTCAACTCTGCAATTTCCGACTGTCACGGCCATGGCTAGCAAGCAAGATAAGGAGCAGAGCACGGAGAAGGCCCACAACCCAAATGTTGTTGTGTTTAGTCTGTTCTTCGATCATCTTCATCTTCATCTTCATCCGAGGAACATTAGTCTTTACATTTGTTGTCTGAATTGGAGATATCACAGGGACATAATGTCTCATTCGTTTGGAGAGGCGTGTGCGACAAGAAGTGAGGAAGAAGGGTTCGGAGGGACTTATGGAGGCAAACAATGGATCACTGAAACTGAGAATGTTCCTAAGACTACACATGAGAATCATCCAGGTGGGGTGGTCCTTATTGAAGTTGATCGAATACTCAAACCTGGGGAATACTTTGTTTTAACCTTCATGACTAGCAAGCCACAAAAGTGTTTGTCGAGTATGAGGACAGACACGATCGCTGTATTGGAGAGTTGTCTAAGGAATTCTGTTGGAAACTTCAAGGTCAACAGGAGGAAACATTTATATGGCAAAAACATTTATATGCCTTACTTTGCTTCTCGCAAACATGGGGCTAGACATCTTTGTAAAGAAGACTATGTTGTTCAAACTTACTATCAGCCTCTAGCTTCATGTAAAAGTGAAACTGCTAGCAAAAGCGTGGATTCTTATGGTTATCTCATTGTTTCTAAATTAGATGCCAGCGATGGTAATATTGCTGTGGATGGAGCTTATCGTATTGTGACCATCTATGATCCTCGAAGATGGTCTACATGGCAAGATGGGTTCACTGTTCAAAATATGGGATCACTGGACTTGTTTTCTCATCAATTGACCTTGACTATATATACACACAAGGAGTTGAGTATGAGATGTTCTGTGGGCAATGGAAAGAAAGCAAGAAAGTATTTTCATTTAGAGAAGATTAAAGAATTCTCATGCACATAG 3717 46.11 MLLESHTKLYIATPLWNYESRIKREFDLRTQCSNYKTFIEIIPLYFLTWSRLVPSKIRGQAKFQPGSASSFITSPEYGGLAYFLTPSERRRAGLFRLRCGGAFLAVLPSLLPSPLQGHRLPLLLSDLSFLDLFLTPAGRSSYTVVDHEYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMDDGTLHRFHAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGVPTNYHGEVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLERDAGEKTIAWLDKLRYSNGSLPTPKIRLNMQRIMQNNAAVFRTQETLEEGCKLIDDVWKSFHDVQVKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTTRDDKNWMKHTLGYWENEAVRLDYRPVHMNTLDDEVETFPPKAHVEFNLLLEIQVVGVRGMVEVFGRHRSQNVIFKPVVLLQSAVRCPTVGVLWARLGSWGPGLGSVGAQWAQPRCTAPTGPSRLLRPNQERLSDSSKLPGMYVALVCATVARVSLSLVRIADVSRISRDAVRMRADVFPSVHAACALPMPMSAWHQRMEHLVVPRLTPVPLCVNQQSRLIIPSLHLTVYEGRASPSVPPSRFTSTLQFPTVTAMASKQDKEQSTEKAHNPNVVVFSLFFDHLHLHLHPRNISLYICCLNWRYHRDIMSHSFGEACATRSEEEGFGGTYGGKQWITETENVPKTTHENHPGGVVLIEVDRILKPGEYFVLTFMTSKPQKCLSSMRTDTIAVLESCLRNSVGNFKVNRRKHLYGKNIYMPYFASRKHGARHLCKEDYVVQTYYQPLASCKSETASKSVDSYGYLIVSKLDASDGNIAVDGAYRIVTIYDPRRWSTWQDGFTVQNMGSLDLFSHQLTLTIYTHKELSMRCSVGNGKKARKYFHLEKIKEFSCT 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5320172 5331635 + BLOR16716 Blo06g00133 61426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00133 1238 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 388 491 IPR027477 -
Blo06g00133 1238 SUPERFAMILY FAD/NAD(P)-binding domain 141 569 IPR036188 -
Blo06g00133 1238 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 378 496 IPR027477 -
Blo06g00133 1238 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 147 723 IPR011281 GO:0006099|GO:0016627|GO:0050660
Blo06g00133 1238 Gene3D - 150 557 IPR036188 -
Blo06g00133 1238 Gene3D - 573 683 - -
Blo06g00133 1238 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 132 732 - -
Blo06g00133 1238 Pfam FAD binding domain 150 546 IPR003953 -
Blo06g00133 1238 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 150 721 IPR014006 GO:0016627|GO:0022900|GO:0050660
Blo06g00133 1238 Gene3D succinate dehydrogenase protein domain 684 732 - -
Blo06g00133 1238 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 592 732 IPR037099 GO:0016491
Blo06g00133 1238 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 132 732 IPR030664 -
Blo06g00133 1238 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 184 193 IPR003952 GO:0016491
Blo06g00133 1238 Pfam Fumarate reductase flavoprotein C-term 602 729 IPR015939 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00133 K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] - pop:7473170 1147.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00133 Blo-Chr6:5320172 Blo10g00459 Blo-Chr10:9358261 3.06E-70 dispersed
Blo06g00133 Blo-Chr6:5320172 Blo01g00450 Blo-Chr1:4957962 6.58E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00133 Blo_Chr06 FPKM 1.834667 1.40011 3.381505 3.619895 2.542163 2.136111 1.94955 0.685936 0.795908 0.489552