Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00138 ATGCCGACGTTTTCTGCTATTACTTTGGATAGGTTGCTAGAACCTGGGGCTTCTAAAACCATTAACCAATCTCTTCCACCAAAGGCTGCTTCAAATTCTAGTTTGTTTCCAAATTCAAAGCTGGAGAGGAGAAATAGTACATCAGTCACTGAAAGGAAAGTCCAACGACCTCTGTTAAAGCCATCACTTTATGCTACACCAGAATCAACTCCATTACCAGATTCACCATCTTCCTTTCCTCCATCTCCATATATCATTAATCACAAGCGGCGTGGGCCACGTCTCCTAAAGAGCTTTTCTGAGGATGATGTATCCTCCCGCAATAAAACATTAAAGGAAGCAAAAGTAAATGACAATAAAATGGAAGAAGTTGGTAAAGTGAATGAGGATGCTCTTAGTGCTTCTACTTCTCTTGACCCAATTAATCATGAACGCATGAACGGTAACCATGATTATGGTAGCAGCAGTGATCAAATTGGAAGCAGAAGCATTAATGGCCAACTTAGGAAAAGTATTAGTGAACATGAGAGCTTTAAGATCAATGGGGATTGTGGAAGCAATGGCATGGACGAAAGTGTGGATGTAGGGAATGACTCTTTAAAACTTGTCACTTCTAGTTCAGAAAGAGTTAGAGATGCTGAAGACTTTTTTGACCTACATGAGTCAATGAGTTTCATGAGTAACACAGATGGAGAAGATAATGGTGCAGATCAATCAGGGAAACTCAATACACCTGCAGGAGAATTTTTTGATGCTTGGGAAGAACTATCATCCGAGGGTGGGCGACAACCTTCTATTCGTGATATTGAAGGTGAGTTGCGCGAAATGAGATTGAGTCTTTTGATGGAAATTGAGAAGCGAAAGCAGGCTGAAGAAACCCTGAGTAACATGCAGAGCCAGTGGGAGACGTTCAGGCAGCAGCTATCCAGGGCTGGCTTGACACTCAATGCTGATTCCGGTTTCATGGCAGAGGGGCAGCAGCTTAATTCTGATCATGTGAATGACCTGTGCCAACAAGTTTATCTGGCCAGGTTTGTTTCAGATTCTATCGGGAGGGGTATGGCCAGGGCGGAGATGGAGATGGAGATGGAAGCTCAGTTGGATGTAAAGAACTTTGAGATTGCACGGATGTTGGACAGGCTTCATTACTATGAGGCAGTGAATCATGAAATGTCTCAGAGGAATCAAGAATCTGTTGAGATGGCTCGGCGAGAGAGGCTGAAAAAGAAAAGAAGACAGAAATGGGCATGGGGCGCAGTTGCTGCTGCAATGACAGTGGGTACAGCTGCCTTAGCTTGGTCTTACTTCCCTTCGGGAGGAAAATTATCATCATCTTCGTCGTTGACATCATCTTCAAGAGCTCCAGCCATGGAACTCGCTCTCCATACATCAGCTACGGCCACTCTTCACCCAGATATTTTCCCTTCCGATTTCTTCTTTCACCCAACTCTCGCCTCCTTCCATTCCCATTGTCAGAGCACTATTCTTCGTTTCCGCCGAAATGATTACCCAGATATTCATTTTCGATTCCTCAAGAACACCGGACAACAAACCGGAAGCCTTGCATTTTCGCAGAAAGTACGCTGCCCTGTTTACGTTAGCCACTTGGAGTATGTCAAAGACGAGGAAGAAGAGGTTAGCTCTTCTTATTCAGAGGACCAACGTCCTGTCTTATCTCTGAGCGAGAAACCTGACAGAAACTTGGCTTTGCTTGACGATTACGAGGCGGAGGAGCTCAACTACGACGCCGGCCCCAATCACCGGAGCGGATATATCGCGTTGCTTGGGAAGCCGAATGTGGGGAAAAGCACGCTCGCTAATCAAATGATTGGTCAGAAGTTGTCAATTGTAACAGACAAACCTCAGACTACGAGGCATCGAATTCTTGGTATATGTTCGGGTCCAGAGTATCAGATGATACTTTATGACACACCTGGTGTAATTGAGAAGAAATTGCACAAGTTGGATTCTATGATGATGAAAAATGTTCGCAGCGCTGCTATTAATGCAGATTGTGTACTTATTCTTGTTGATGCATGTAAATTGCCCGAGAAAATTGATGAGATCTTGGAAGAAGGTGTAGGGGACCTTCAAGAAAAACCACCTACTTTGTTGGTTTTGAATAAGAAAGATTTAATCAAACCTGGTGAAATTGCGAAGAAGCTGGAGTGGTATGAGAAATTTACGGATGTCGATGAGGTAATACCTGTAAGTGCTAAATACGGACATGGTGTGGAGGACGTGAAGGATTGGATTCTTTCAAAAATTCCACTCGGGCCAGCTTATTATCCTAAGGATATTGTTAGTGAGCATCCAGAAAGATTCTTTGTGTCTGAAATTGTCAGAGAGAAGATTTTTATGCAATATCGAAATGAAGTTCCTTATGCATGCCAGGTGAACGTGGTGAGCTACAAAACAAGACCAACTGCTAAAGATTTTATACAAGTTGAGGTTGTTGTTGAGAAAAACTCTCAGAAGATCATCCTCATTGGGAAAGAAGGAAAGGCGTTAAAACTTCTTGCAATAGCTGCTCGACTCGACATAGAAGATTTTTTACAGAAGAAAGTTTATCTCGAGGTGGAAGTTAAAGTAAGAGAAAACTGGAGACAAAATGAAGGGCTTCTGAAGGAGTACGGGTATGGAGGACAAAGTGGTGTAATATGA 2664 43.17 MPTFSAITLDRLLEPGASKTINQSLPPKAASNSSLFPNSKLERRNSTSVTERKVQRPLLKPSLYATPESTPLPDSPSSFPPSPYIINHKRRGPRLLKSFSEDDVSSRNKTLKEAKVNDNKMEEVGKVNEDALSASTSLDPINHERMNGNHDYGSSSDQIGSRSINGQLRKSISEHESFKINGDCGSNGMDESVDVGNDSLKLVTSSSERVRDAEDFFDLHESMSFMSNTDGEDNGADQSGKLNTPAGEFFDAWEELSSEGGRQPSIRDIEGELREMRLSLLMEIEKRKQAEETLSNMQSQWETFRQQLSRAGLTLNADSGFMAEGQQLNSDHVNDLCQQVYLARFVSDSIGRGMARAEMEMEMEAQLDVKNFEIARMLDRLHYYEAVNHEMSQRNQESVEMARRERLKKKRRQKWAWGAVAAAMTVGTAALAWSYFPSGGKLSSSSSLTSSSRAPAMELALHTSATATLHPDIFPSDFFFHPTLASFHSHCQSTILRFRRNDYPDIHFRFLKNTGQQTGSLAFSQKVRCPVYVSHLEYVKDEEEEVSSSYSEDQRPVLSLSEKPDRNLALLDDYEAEELNYDAGPNHRSGYIALLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPGVIEKKLHKLDSMMMKNVRSAAINADCVLILVDACKLPEKIDEILEEGVGDLQEKPPTLLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDVKDWILSKIPLGPAYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEVVVEKNSQKIILIGKEGKALKLLAIAARLDIEDFLQKKVYLEVEVKVRENWRQNEGLLKEYGYGGQSGVI 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5512551 5519889 + BLOR16721 Blo06g00138 61431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00138 887 Hamap GTPase Era [era]. 587 880 IPR005662 GO:0003723|GO:0005525
Blo06g00138 887 CDD Era 587 755 IPR030388 GO:0005525
Blo06g00138 887 Gene3D - 770 884 IPR015946 -
Blo06g00138 887 MobiDBLite consensus disorder prediction 139 160 - -
Blo06g00138 887 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 588 758 IPR030388 GO:0005525
Blo06g00138 887 PANTHER BACTERIOPHAGE N4 ADSORPTION B PROTEIN 1 451 - -
Blo06g00138 887 PANTHER BACTERIOPHAGE N4 ADSORPTION B PROTEIN 1 451 - -
Blo06g00138 887 MobiDBLite consensus disorder prediction 18 44 - -
Blo06g00138 887 TIGRFAM era: GTP-binding protein Era 590 863 IPR005662 GO:0003723|GO:0005525
Blo06g00138 887 Pfam 50S ribosome-binding GTPase 592 709 IPR006073 GO:0005525
Blo06g00138 887 Pfam KH domain 792 869 IPR004044 GO:0003723
Blo06g00138 887 MobiDBLite consensus disorder prediction 18 83 - -
Blo06g00138 887 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 765 880 IPR009019 GO:0003723
Blo06g00138 887 Gene3D - 585 769 IPR027417 -
Blo06g00138 887 TIGRFAM small_GTP: small GTP-binding protein domain 592 750 IPR005225 GO:0005525
Blo06g00138 887 Coils Coil 280 307 - -
Blo06g00138 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 790 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00138 K03595 era, ERAL1; GTPase - minc:123199539 891.338
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00138 Blo16g00055 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00138 Blo-Chr6:5512551 Blo16g00055 Blo-Chr16:1921888 2.11E-99 dispersed
Blo06g00138 Blo-Chr6:5512551 Blo08g00245 Blo-Chr8:3046571 2.40E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1002 . Blo16g00055 . Bda10g00140 . . . . . . Cma03g00736 . Car03g00671 Car07g00418 Sed14g1136 Cpe19g00818 Cpe10g00624 Bhi03g01326 Tan03g2002 Cmetu08g0549 . Hepe04g1528 . . Cla01g01922 Cam01g2008 Cec04g1667 Cco04g1728 Clacu01g2029 Cmu01g1904 Cre04g1579 Cone8ag0820 . Cone6ag1640 Cone9ag1560 Lsi01g00665 . . Cme08g00862 . Blo06g00138 Bda11g01856 . Bpe10g00122 . . . . . Cmo07g00475 . . . . . . . . . . . . . . . . . . . . . Csa06g03258 Chy02g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010370 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00138 Blo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0