Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00146 ATGTGCAGCAGGCTCGCTGGGCCTGGTTGTAGCGCGTGCTTGGCTGGCCGCTCGCGCGCTGGGTTGGGCCCCGTGCACTGGCTGGATCAAGCGGGTTACACGCGCTGGGTAGGGCGCTGGGTCAGGTGCGCCACTGACGGGCAAACAAGTACGACACTGACGGGTCGCATGATTTGTAGGATGCCCTTGCTGACAGGGCTCGCTGACGAGGCGTGGGCGGGCGACGATGGGCACACTGTCGAGCAGGCTCTCAGTAAAATTGCTAGCAATCGTCTCCAAAAGGAGCTTCTCGAATGGCAGGTTAATCCTCCATTCGGCTTCAAACACAAGGTCACTGATAATCTCCAAAGGTGGGTTATTGAGGTCAACGGAGCTCAAGGGACCCTCTATGCGAATGAGGTTTACCAGCTTCAAGTTGATTTTCCTGAACATTATCCGATGGAAGCCCCTCAGGTTATATTTCTGCATCCTGCTCCGCTGCATCCTCATATTTATAGCAATGGACATATTTGTTTAGATATTTTGTACGAGTCATGGTCTCCTGCCATGACTGTGAGTTCTATTTGTATCAGCATTCTCTCCATGCTATCAAGCTCCACTGCCAAGGAGGGGGGAGCTTGTGGCAAAAATCACAGTTCCAGCAAAGTTCATGGTGAATATTTTGGGACAAAGAAGTACGTACAAGGAGAAGTCTTCAGAGGCCTTGTTCCAAACCTTGAAGTTGTAATTCTGGATGGCCACCACTTCATTCAATAG 756 51.32 MCSRLAGPGCSACLAGRSRAGLGPVHWLDQAGYTRWVGRWVRCATDGQTSTTLTGRMICRMPLLTGLADEAWAGDDGHTVEQALSKIASNRLQKELLEWQVNPPFGFKHKVTDNLQRWVIEVNGAQGTLYANEVYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYESWSPAMTVSSICISILSMLSSSTAKEGGACGKNHSSSKVHGEYFGTKKYVQGEVFRGLVPNLEVVILDGHHFIQ 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5745917 5751231 - BLOR16729 Blo06g00146 61439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00146 251 Gene3D Ubiquitin Conjugating Enzyme 77 232 IPR016135 -
Blo06g00146 251 SUPERFAMILY UBC-like 84 198 IPR016135 -
Blo06g00146 251 SMART ubc_7 90 233 - -
Blo06g00146 251 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16-RELATED 83 202 - -
Blo06g00146 251 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 87 236 IPR000608 -
Blo06g00146 251 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 160 175 IPR023313 -
Blo06g00146 251 Pfam Ubiquitin-conjugating enzyme 91 203 IPR000608 -
Blo06g00146 251 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 83 202 - -
Blo06g00146 251 CDD UBCc 89 189 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00146 K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W [EC:2.3.2.25] - qsu:112000857 231.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00146 Blo16g00061 CCT
Blo06g00146 Blo16g00061 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01578 Blo-Chr1:55586351 Blo06g00146 Blo-Chr6:5745917 1.23E-71 dispersed
Blo06g00146 Blo-Chr6:5745917 Blo02g01137 Blo-Chr2:42764944 1.10E-19 dispersed
Blo06g00146 Blo-Chr6:5745917 Blo16g00061 Blo-Chr16:1956089 7.49E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1050 . Blo16g00061 . Bda10g00150 . Bpe13g00430 . Bma15g00984 . Cmo16g00693 . . . . . . . . . . . . . . . . . . . . . Cone8ag0829 Cone12ag0782 . . . . Chy07g01261 . . Blo06g00146 Bda11g01849 . Bpe10g00132 . . Bma06g00109 . . . Cma16g00635 . . . . . . . . . . . . Cla07g00833 Cam07g0903 Cec07g0955 Cco07g0945 Clacu07g0876 Cmu07g0877 Cre07g1239 Lsi07g00235 Csa04g00542 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003259 4 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 4 1 1 1 1 4 1 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00146 Blo_Chr06 FPKM 50.195816 55.643734 54.037853 56.178238 48.500172 47.025318 45.79961 103.123276 107.073059 95.138542