Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00186 ATGATGAACGAGAACTCGGGATTCGGGAAGGAACTCGGGACGAACTACGAAGATGAAGACGAAGATGAAGACGAAGAGCATATTGAATCGGGAGTCGAGGCTCGAGGCTTGGGGCTCGGAAGGAAGTTGGAAGACGAAAGTGGAACTAGAACCCTAAATTGCCTAAATTGGATAAATAGATCATCATTTCAATTTAAGGAAGCCGTTTCGATTGAAGGTTCCAAAACTGGCGGGAAAATTCTTTTGCCAAAAACCTTCCCACGGCCAATCCCTAAACTCCCCGCCGCTGAACCTTCAATGGCCGGCGCCCGCACAATCAACGTCCTTAACGTGGCGGAGAAGCCGTCGGTGGCCAAATCCGTGGCCTCCATACTTTCCAGGAACCAAGGATTGCGAATACGAGAAGGCCGCTCTCGCTACAACAAGATATTCGAGTTCAACTACTCTATTCGGGGACAGCCCTGTTTCATGCTCGTAACCTCCGTCACCGGTCACCTCATGGAGCTTGAATTCGAAGAGCGGTACAGGAAATGGCATTCCTGCGATCCCGCGGATCTCTACAGCGCTCCAGTCCAAAAGTTTGTTCCCGAGGACAAGATAGATATAAAGAGGACGTTGGAGGATGAAGCTCGGCGGTGCCAGTGGCTTGTATTGTGGCTGGACTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTGATAGAAGTTTGCAGAGCAGTGAATCACCATCTCACTCTAAAGAGGGCTCGGTTCTCTGCATTGATTGATAGAGATATCCATGAAGCTGTGCAAAATCTTGATCGACCAAATCAATGGTTTGCTGATGCTGTTGATGCTAGGCAAGAAATAGATCTTCGTATTGGTGCTTCATTCACAAGGTTTCAGACCATGCTGTTGAAAGACAGATTTGTTATTAATACTGCCACAGATGACCGGAATCTGGTTTTGAGTTATGGACCTTGTCAATTCCCTACTCTTGGCTTTATTGTGGAACGTTATTGGGAGGTACAATCACACGAGCCAGAAGAATTTTGGACCATTAACTGTTCACACAACTCAGATGAAGGTGTAGCTACTTTTAACTGGATGAGAGGACATTTGTTCGATTATACTTGTGCTGCTATAATATACGAGATGTGTGTACAGGAACCAACCGCCACAGTGTGTAATGTTAGAAACCAACAAAGACTGAAACATCCTCCACATCCTCTTAATACCATTGAGCTTGAAAAGCGTGCTTCTCGATATTTCCGTATGAGTTCTGAACATACTATGAAGGTTGCAGAAGAACTATACCAAGCTGGTTTCATCAGTTATCCACGTACTGAGACTGATTGCTTTTCTCAGAGGACTGATCTACAAGCAATTGTGCAAGAGCAACAGAACCATCCTGTTTGGGGAACATATGCACAACGACTGTTGGATCCTGGAGAGGGACTTTGGAGGAATCCAAGCAATGGTGGCCACGATGATAAGGCACATCCTCCTATCCATCCAACAAAGTTTTCACCAGGAGAAAATGGGTGGAGTCAAGATCACCATAGGCTTTATGAGCTGGTTGTTCGACATTTTCTAGCATGCATCTCACAGCCAGCCATAGGAGCTGTGACTACTGTTGAAATTGACATTGCTGGTGAATTGTTTTCAGCATCTGGGAGAGCAATTATTGCAAAAAATTACTTGGATGTCTACTGCTTTGAATCGTGGGGAGGATCCATTATTCCAACATATGTTTCTGGACAACAGTTTATTCCTACAACATTGACTCTTGATTCAGGAGTTACAAGACCACCACCACTTTTGAGTGAAGCTGATTTGTTGAGTTGTATGGATAAGGAGGGCATTGGTACAGATGCAACGATGCATGATCACATAAAGAAGCTATTGGATAGATTTTATGCAACTAAGGACTCAAACACTCATTTCTCACCAACTAATCTTGGAGAGGCGTTGGTATTGGGATACGACGATATGGGGTATAAGTTATGGAAACCATACCTCAGAGCTACTATGGAACGAGACATGAAAGAAGTTAGTGAAGGCAATAAGAGCAAAGCTGAAGTTTTGGCAACTTGCTTGCAGCAGATGAAGGCTTGTTTTTTAGATGCGAGGTTGAATAAAATAAAACTTCTTGAAGCCATGGGTATATTTTTCGAAAGATTCAACAGATCTGGTGTGAATGATCAGCATACAACAGGAGAAATTGTTCGCCAATGTGGAGTTTGCCAGGAATTAGATATGGTTCTTAAAAAAAACAGGGATGGCAATTACATGGTTGGCTGCTTGGGATATCCCCAGTGCAGGAACGTTGTATGGCTCCCTGGATCCATATCAGAGGCAACTGTAACCTCTAATATTTGCGAGTCTTGCACTCCAGGTCCTATTTACTTGATCCAATTCAAATTTCGACGCCTGGAAATACCACCAAATTACAACCCTAACCATTTGGGTTGCGTGGGTGGTTGCGATTTGATTCTTAGGCAATTGACAGAAATATGTGGAACTGGTTCTCGGATTTCAGGAAGAGGTCGAGGAGTCACGCAATCTGCCAATGATGTTCCACGAAGTAACACTAGGCAGGCTACTTGCGTATACTGCCTGCAACCTGGACATTCTTCTAATGACTGCTCTTCTCGGGTTCCTCACTCCCAACATGCTCAATCACGTGGACAAAGTGAATGTTCAGTTTCATGCAGCACATGTGGGACACCATGCATCGTCCGAACTGCTAATACTGCTAATAACAGGGGAAGAAAATTCTACTCATGTCAATCTCAAGAGTGCAACTTCTTTGTATGGGAAGATAGCTTAAACAATGGCACTGGAGGAAATGGTACTTCACGTGCAAGCATGAGGAGTACCCCAGCAGCTAATCCCAGCAGGGGCCGTGGTCGTGGTCGTGGTCGTGGTCGGAGTGGAGCACAAACTCCTTCTACCACTTTTGTATCTGCAACGGGGGAGCCAATATCTGGTAGAAGATGCTTTACTTGTGGTGATCCATCACACTTTGCAAACGCATGTCCGAACCGAGGTACCTGA 3039 44.85 MMNENSGFGKELGTNYEDEDEDEDEEHIESGVEARGLGLGRKLEDESGTRTLNCLNWINRSSFQFKEAVSIEGSKTGGKILLPKTFPRPIPKLPAAEPSMAGARTINVLNVAEKPSVAKSVASILSRNQGLRIREGRSRYNKIFEFNYSIRGQPCFMLVTSVTGHLMELEFEERYRKWHSCDPADLYSAPVQKFVPEDKIDIKRTLEDEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNHHLTLKRARFSALIDRDIHEAVQNLDRPNQWFADAVDARQEIDLRIGASFTRFQTMLLKDRFVINTATDDRNLVLSYGPCQFPTLGFIVERYWEVQSHEPEEFWTINCSHNSDEGVATFNWMRGHLFDYTCAAIIYEMCVQEPTATVCNVRNQQRLKHPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDCFSQRTDLQAIVQEQQNHPVWGTYAQRLLDPGEGLWRNPSNGGHDDKAHPPIHPTKFSPGENGWSQDHHRLYELVVRHFLACISQPAIGAVTTVEIDIAGELFSASGRAIIAKNYLDVYCFESWGGSIIPTYVSGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSNTHFSPTNLGEALVLGYDDMGYKLWKPYLRATMERDMKEVSEGNKSKAEVLATCLQQMKACFLDARLNKIKLLEAMGIFFERFNRSGVNDQHTTGEIVRQCGVCQELDMVLKKNRDGNYMVGCLGYPQCRNVVWLPGSISEATVTSNICESCTPGPIYLIQFKFRRLEIPPNYNPNHLGCVGGCDLILRQLTEICGTGSRISGRGRGVTQSANDVPRSNTRQATCVYCLQPGHSSNDCSSRVPHSQHAQSRGQSECSVSCSTCGTPCIVRTANTANNRGRKFYSCQSQECNFFVWEDSLNNGTGGNGTSRASMRSTPAANPSRGRGRGRGRGRSGAQTPSTTFVSATGEPISGRRCFTCGDPSHFANACPNRGT 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7838650 7854410 + BLOR16769 Blo06g00186 61479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00186 1012 MobiDBLite consensus disorder prediction 941 957 - -
Blo06g00186 1012 SMART topIban2 245 346 IPR003601 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 CDD TOP1Ac 273 700 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 CDD TOPRIM_TopoIA_TopoIII 107 266 IPR034144 -
Blo06g00186 1012 MobiDBLite consensus disorder prediction 1 33 - -
Blo06g00186 1012 ProSiteProfiles Zinc finger CCHC-type profile. 992 1009 IPR001878 GO:0003676|GO:0008270
Blo06g00186 1012 ProSiteProfiles Toprim domain profile. 107 252 IPR006171 -
Blo06g00186 1012 SMART c2hcfinal6 862 878 IPR001878 GO:0003676|GO:0008270
Blo06g00186 1012 SMART c2hcfinal6 993 1009 IPR001878 GO:0003676|GO:0008270
Blo06g00186 1012 Gene3D - 96 269 - -
Blo06g00186 1012 Pfam DNA topoisomerase 270 689 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 SMART toprim5 107 242 IPR006171 -
Blo06g00186 1012 SMART topIaneu2 392 652 IPR003602 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 SUPERFAMILY Prokaryotic type I DNA topoisomerase 108 699 IPR023405 -
Blo06g00186 1012 PANTHER PROKARYOTIC DNA TOPOISOMERASE 107 800 IPR000380 GO:0003677|GO:0003917|GO:0006265
Blo06g00186 1012 MobiDBLite consensus disorder prediction 484 505 - -
Blo06g00186 1012 PANTHER DNA TOPOISOMERASE 3-ALPHA 107 800 - -
Blo06g00186 1012 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 429 443 IPR023406 GO:0003917
Blo06g00186 1012 PRINTS Prokaryotic DNA topoisomerase I signature 434 443 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 PRINTS Prokaryotic DNA topoisomerase I signature 316 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 PRINTS Prokaryotic DNA topoisomerase I signature 516 532 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 PRINTS Prokaryotic DNA topoisomerase I signature 216 229 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 PRINTS Prokaryotic DNA topoisomerase I signature 614 628 IPR013497 GO:0003677|GO:0003916|GO:0006265
Blo06g00186 1012 Gene3D Topoisomerase I, domain 3 340 598 IPR013825 -
Blo06g00186 1012 SUPERFAMILY Retrovirus zinc finger-like domains 986 1010 IPR036875 GO:0003676|GO:0008270
Blo06g00186 1012 Pfam GRF zinc finger 897 936 IPR010666 GO:0008270
Blo06g00186 1012 Gene3D Topoisomerase I, domain 4 400 530 IPR013826 -
Blo06g00186 1012 Gene3D Topoisomerase I, domain 2 276 700 IPR013824 -
Blo06g00186 1012 Pfam Toprim domain 109 253 IPR006171 -
Blo06g00186 1012 MobiDBLite consensus disorder prediction 941 985 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00186 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - jre:109018851 1549.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01717 Blo-Chr1:56896063 Blo06g00186 Blo-Chr6:7838650 3.93E-22 dispersed
Blo06g00186 Blo-Chr6:7838650 Blo07g00068 Blo-Chr7:1009017 7.77E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1325 . . . . . . . Bma15g00775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00186 . . Bpe10g00267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007676 1 4 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 2 2 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00186 Blo_Chr06 FPKM 6.193516 7.544636 2.813802 2.522153 9.631735 8.264075 10.081147 0.310263 0.121357 0.234408