Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00188 ATGAGTCTAGGGACGCGATATCTCGTCCTGACTTCACTGTGCTGTGAAGTTGAGGACGAGGTCTTAGACGATGCAGACGAGTCACGTCATCCGCAAATGTATTGCAAGTCTCCCTTAGCTTGGGGACGACTCGGGACAAAGTTTCACGTCCTGAATTCACTATGCTACGGAGTTGCGGACGAGGGTCCAGACGATGCGGACGAGAGTGGTAGCGTTCGTATCGAATCTATTCTAAACAAGGACGGTTTCAGACAAAACGATCCATTTGAAGTCTTTAATGACGAGCTAATCAATGCAAAAATTATTTACTCTGTAGCTCCAGCTATGGGTCATAACCAGGAATCTCATCCAGAGTCACATTTAAGAGTTCCTGCAATCATAAATGCACTCGAAATGATGGAACTTACTCCAAAGCTCCAAGTTTTAGTTTTACAAGATGAAGATGATGAATTGCAATCTCAAGATAATCTTTGGCCTTCAACTGAGGAAGAGACAAAAAATTCAATAGAAGACAATGTGGAGGTATCCCTTAATTCAGTGGTAGGACTTACGGCTCTAAGAACAATGAGATTATGGGGTACCGTTCGAGGAAAGAAAGTAGTAGTTTTGATTGACAATGAAACTACCTGTAATTTCATAGCCAAACGGCTAGTAGAAGAGTTGAAATTACTCATTTCTTTTTCAGTAAACTACAACATTCAACTGGGTAATGGAGAATCCTTACAAATTACTGAGCAGTTAAAAAAAGATCAATTCTGTTGGTCTAGTGAAGCTGAAACAGCCTTTCAAAGACTGACATTACCTAATTTCAATGAACCTTTTGTTGTTGAGACAGGTGCTTCAAGTTTAGGAATTGGTGCAAAGTGGAGATCTTACTTACTTGGGCGACACCTTATTGTGCAAACTGATCAAAAGAGTTTAAAATTTCTTTTGGAGCAGCGAATGGTGGCTGTTGAACATCAACGTTGGCTAACAAAGTTATTGGGATTTGATTTTGAAATTCATTATAATCCGGGAGCTAAAAATTTGGTTGCTAATGCTTTATGTAGAAAAGTTGATAATGAAGTTGGGGGAGAACTTAATATTAATTGTACTAGTATGATTGATCAGCAACAACTAGAAGCAGAATTTGATGCAGATTCCAGATTGCGGAAGATCAAGAATGATTTGATTTCAAACTCGTGTCTGATTATGCAAATATTTCATGACAATCCTATTGGGGGACATTCCAAAATCTTCCGTAGCACAGAGATCATCGAACTTCAAAATTTTAAGCCAGCTTTGCTTGATGATGTTGCTAGTGTTCATTCAAAAGCCTATATAAATGGTCTTGAGAAGGCTATGGATAAAGCATTACAAGATGGAATTATTTTTATTGATAACTCAGGGCCAACATATGCTACTGCAACTACGTATAAAGAGTCATTACTCGCAGCTGGAGCAGGAATTGCCTTAGTTGACTCAGTGGTTACAGCATCAAAAATCTCTAAGGATCCTCCGATTGGATTTGCCTTGATTAGACCTCCGGGACATCATGCAATTCCAAAGGGACCCATGGGCTTTTGCGTTTTTGGCAACATTGCTATAGCGGCCCGTTATTCCCAACGTGCACATGGGTTGAAACGCGTGTTTATAATCGATTTTGATGTCCATCATGGAAATGGAACAAATGATGCTTTTTACGATGATCCAAATATATTTTTCCTTTCAACTCATCAAGACGGAAGCTATCCAGGTACTGGTAAAATTGACAATGTAGGTTGTGGAAAAGGTGAAGGAATGACCCTAAATCTTCCTCTACCGGGAGGCTCAGGTGATTTCGCCATGAGAACAGTGTTTGATGAAGTGATCGTACCGTGTGCTCAAAGATTTAAGCCTGATGTCATTCTCGTTTCGGCTGGGTATGATGCTCATGTGTTGGATCCATTGGCCGGTTTACTATTTACAACAGCGACATATTACAAGTTGGCGTCGAATATTAAGCAACTAGCGAAAGAGTTATGTCGAGGCAGATGCGTGTTCTTTTTGGAAGGGGGCTATAATCTCAAGTCTCTCTCTAACTCAATCTCGGACTCGTTTCGAGCTTTTCTTGGGGAGCCAAGCTTGGCATCCGAGTTTGACGACCCTACGTATTTGTATGAAGAGCCATCGACCAAACTCCAGCGGGCAATTGAAAAGGTTCAAGTTGGAGCAGTCACGGTTGAGGTTGGAGGACCCATGGTTGCTCCTGTTACAGATGCTGAGGTTGAAGCACAACCTCAACCTCAACCTCAGCCTCGACAACGACCAACAGCAAGGGCATTGGTCCGTTTCCAACCCGTTACAGCGAGATTAGGTAGAAGTTTCTGTGAACGGATTGTCAAACTCTTTTATGCCAATTTGGAACTATCCACCCAACTATTAGAGGTCCCAACTTACATGTTTGGACGGGAGTTGAGACGAGAAGAAGGTCTAATAGTGCTTAGATTGTTGCACCATAATCTCGAGATTAGAGCATACAAGAAGCCAAAGTCCAATTACTTGAATGTCATAGCTCGAGTGATCCACACCATTATGATGCACACCATTTTGCCTCAAGATATACATCGAGACCATGTTAGCGACATGGATCTCTATTTGTTGGAGAAGGATGGAGGAGCAAGCAGCGGAGCGACATCTTTCGGTGTTGGATCGAGTCTGACGGATGGAGGATCGACTTGTCCGGATGGAGGAGCTCTATCAAATGGGGCTGCACATAATACTAATGATGAAGGAGCACCATTAAATGGGGCTGCTCTAAATGCAAAAAATAAAGGAGCGAGCAGAGAAGCGCCATCATGA 2820 41.95 MSLGTRYLVLTSLCCEVEDEVLDDADESRHPQMYCKSPLAWGRLGTKFHVLNSLCYGVADEGPDDADESGSVRIESILNKDGFRQNDPFEVFNDELINAKIIYSVAPAMGHNQESHPESHLRVPAIINALEMMELTPKLQVLVLQDEDDELQSQDNLWPSTEEETKNSIEDNVEVSLNSVVGLTALRTMRLWGTVRGKKVVVLIDNETTCNFIAKRLVEELKLLISFSVNYNIQLGNGESLQITEQLKKDQFCWSSEAETAFQRLTLPNFNEPFVVETGASSLGIGAKWRSYLLGRHLIVQTDQKSLKFLLEQRMVAVEHQRWLTKLLGFDFEIHYNPGAKNLVANALCRKVDNEVGGELNINCTSMIDQQQLEAEFDADSRLRKIKNDLISNSCLIMQIFHDNPIGGHSKIFRSTEIIELQNFKPALLDDVASVHSKAYINGLEKAMDKALQDGIIFIDNSGPTYATATTYKESLLAAGAGIALVDSVVTASKISKDPPIGFALIRPPGHHAIPKGPMGFCVFGNIAIAARYSQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPNIFFLSTHQDGSYPGTGKIDNVGCGKGEGMTLNLPLPGGSGDFAMRTVFDEVIVPCAQRFKPDVILVSAGYDAHVLDPLAGLLFTTATYYKLASNIKQLAKELCRGRCVFFLEGGYNLKSLSNSISDSFRAFLGEPSLASEFDDPTYLYEEPSTKLQRAIEKVQVGAVTVEVGGPMVAPVTDAEVEAQPQPQPQPRQRPTARALVRFQPVTARLGRSFCERIVKLFYANLELSTQLLEVPTYMFGRELRREEGLIVLRLLHHNLEIRAYKKPKSNYLNVIARVIHTIMMHTILPQDIHRDHVSDMDLYLLEKDGGASSGATSFGVGSSLTDGGSTCPDGGALSNGAAHNTNDEGAPLNGAALNAKNKGASREAPS 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7961420 7978954 + BLOR16771 Blo06g00188 61481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00188 939 SUPERFAMILY Arginase/deacetylase 417 701 IPR023696 -
Blo06g00188 939 Gene3D Histone deacetylase domain 406 740 IPR037138 -
Blo06g00188 939 PANTHER HISTONE DEACETYLASE 14 89 145 - -
Blo06g00188 939 Pfam RNase H-like domain found in reverse transcriptase 288 329 IPR041373 -
Blo06g00188 939 CDD HDAC_classII 417 697 - -
Blo06g00188 939 PANTHER HISTONE DEACETYLASE 89 145 - -
Blo06g00188 939 PANTHER HISTONE DEACETYLASE 410 728 - -
Blo06g00188 939 Pfam Histone deacetylase domain 418 693 IPR023801 -
Blo06g00188 939 MobiDBLite consensus disorder prediction 898 939 - -
Blo06g00188 939 PANTHER HISTONE DEACETYLASE 14 410 728 - -
Blo06g00188 939 PRINTS Histone deacetylase superfamily signature 508 531 IPR000286 -
Blo06g00188 939 PRINTS Histone deacetylase superfamily signature 542 557 IPR000286 -
Blo06g00188 939 PRINTS Histone deacetylase superfamily signature 626 636 IPR000286 -
Blo06g00188 939 SUPERFAMILY DNA/RNA polymerases 242 336 IPR043502 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00188 - - - vvi:100244854 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01372 Blo-Chr4:32366986 Blo06g00188 Blo-Chr6:7961420 2.51E-31 dispersed
Blo04g01373 Blo-Chr4:32373106 Blo06g00188 Blo-Chr6:7961420 0 dispersed
Blo06g00188 Blo-Chr6:7961420 Blo06g01220 Blo-Chr6:35780953 3.31E-41 dispersed
Blo14g00569 Blo-Chr14:8794826 Blo06g00188 Blo-Chr6:7961420 1.30E-06 dispersed
Blo06g00188 Blo-Chr6:7961420 Blo07g00296 Blo-Chr7:3423424 1.74E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00188 Blo_Chr06 FPKM 5.178218 5.936314 5.55199 5.969548 5.451286 5.613747 5.451323 5.989291 6.443364 7.049833