Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00198 ATGAAGGGTGGAACGGTTCAGATCAATTGGCACGATAGTAAGCCAGTGCTAACCCTTGATTTCAACCCCCATTCAGGTCTTCTTGCCACTGGTGGAGCTGATTTCGATATCAAGGCATCTATCTCTGTTTCTTTTATATTTCACCGGAAGGATATTCTGGACCTGCAGTGGTCGAGTGATGATGCATTCTTGATTTCTGGATCTGTTGATAATTCTTGCATCATCTGGAATGTGAACAAAGGGTCTGTCCATCAAATTTTGGATGCTCATTGTCATTACGTTCAAGGTGTGGCATGGGATCCATCGGCCAATTATGTTGCTTCTCTCAGTTCAGACAGAAGTTGCAGAATCTATGTCAATAAACCCCAACCAAAAACTAAAGGCAACGAAAAGATGAACTTTGTTTGCCAGCATGTTATTACCAAGGCAGAACAACATGTGACTGATGATTCTAAGTCAACCAAAAGTCATCTTTTCCATGACGAGACACTGCCATCTTTTTTCCGAAGGTTAGCTTGGTCACCTGATGGGTCAATTTTACTTGTGCCTGCAGGTTCTTACAAACTATTTCCTACTTCTGAACCGATAAATACTGCCTATGTATTTTCTAGGAAGGATCTATCGAGGCAACTCCCTGGTGCCAATAAACCTGTTGTAGCAGTTCGATTCTGCCCAAAACGTTTTTGCCTTAGAGGATTAAGTTCGGCTAGATTCTTCAAGCTCCCTTATCGTCTCGTTTTTGCGGTAGCAACTTTGAACTCGTTGTACATATATGACACAGAAAGCGCTCCTCCAATAGCAGTCATGGCTGGTCTTCACTACGCTGCAATAACAGACATCACCTGGTCTGCCGATGCCCACTATTTGGCGTTATCCTCTCAAGATGGTTACTGCACTTTAGTGGAATTTGAAAATGATGAATTGGGATCACCTTATTCTCGTTCAGGAGAAGAAGGCGCGGCGGATCAGATCCTGATCTCAGGTCAGGAGCGAGGGGAAATGGTAGTCCATACAAATCACACTGAAGGGCTTCTTGTCTGCCATAGAGACGAGACAGAAATAGAAAGAGCCGATGGGAAAGCGAGGTTGGAAGAGGAGAGTCCTGCAAAAGCAGAGGAGATGGTGATTGAAATGGACAAGAGGGAAGACAAGGAGGAAAAGAAGGAAAGTAAAGAGGCTTCTGCTTCAAATAAGCCTGCAAAAAGGAGAATAACTCCAATGGCGATTGACCTCTGA 1236 43.93 MKGGTVQINWHDSKPVLTLDFNPHSGLLATGGADFDIKASISVSFIFHRKDILDLQWSSDDAFLISGSVDNSCIIWNVNKGSVHQILDAHCHYVQGVAWDPSANYVASLSSDRSCRIYVNKPQPKTKGNEKMNFVCQHVITKAEQHVTDDSKSTKSHLFHDETLPSFFRRLAWSPDGSILLVPAGSYKLFPTSEPINTAYVFSRKDLSRQLPGANKPVVAVRFCPKRFCLRGLSSARFFKLPYRLVFAVATLNSLYIYDTESAPPIAVMAGLHYAAITDITWSADAHYLALSSQDGYCTLVEFENDELGSPYSRSGEEGAADQILISGQERGEMVVHTNHTEGLLVCHRDETEIERADGKARLEEESPAKAEEMVIEMDKREDKEEKKESKEASASNKPAKRRITPMAIDL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8196813 8202870 - BLOR16781 Blo06g00198 61491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00198 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 45 86 IPR001680 GO:0005515
Blo06g00198 411 Pfam WD domain, G-beta repeat 44 77 IPR001680 GO:0005515
Blo06g00198 411 Pfam WD domain, G-beta repeat 85 118 IPR001680 GO:0005515
Blo06g00198 411 Gene3D - 149 356 IPR015943 GO:0005515
Blo06g00198 411 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 47 397 - -
Blo06g00198 411 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 38 - -
Blo06g00198 411 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 47 397 IPR045145 GO:0006335
Blo06g00198 411 MobiDBLite consensus disorder prediction 358 411 - -
Blo06g00198 411 Gene3D - 4 148 IPR015943 GO:0005515
Blo06g00198 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 87 118 IPR001680 GO:0005515
Blo06g00198 411 ProSitePatterns Trp-Asp (WD) repeats signature. 64 78 IPR019775 -
Blo06g00198 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 45 82 - -
Blo06g00198 411 SMART WD40_4 3 36 IPR001680 GO:0005515
Blo06g00198 411 SMART WD40_4 38 77 IPR001680 GO:0005515
Blo06g00198 411 SMART WD40_4 80 119 IPR001680 GO:0005515
Blo06g00198 411 SMART WD40_4 262 302 IPR001680 GO:0005515
Blo06g00198 411 SMART WD40_4 204 259 IPR001680 GO:0005515
Blo06g00198 411 MobiDBLite consensus disorder prediction 358 398 - -
Blo06g00198 411 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 38 IPR045145 GO:0006335
Blo06g00198 411 SUPERFAMILY WD40 repeat-like 11 316 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00198 K10751 CHAF1B; chromatin assembly factor 1 subunit B - mnt:21396993 483.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00198 Blo-Chr6:8196813 Blo14g00225 Blo-Chr14:1986510 1.63E-25 dispersed
Blo06g00198 Blo-Chr6:8196813 Blo05g00724 Blo-Chr5:25414576 3.28E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00198 Blo_Chr06 FPKM 9.420121 9.123483 0.841529 1.435554 33.890003 31.118719 35.298767 0.078948 0.0 0.068442