Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00212 ATGGCCGATGGTGAGGATATTCAGCCACTTGTTTGCGATAATGGAACTGGCATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGAGCAGTTTTTCCCAGTATTGTGGGGAGACCTAGACACACTGGTGTTATGGTTGGAATGGGGCAGAAAGATGCTTATGTGGGTGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGAATAGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAGCACCCAGTACTGCTCACGGAGGCTCCCCTTAACCCCAAGGCTAACAGAGAAAAGATGACACAGATCATGTTTGAAACCTTCAATGTCCCTGCCATGTATGTTGCCATCCAGGCTGTTCTATCTCTGTATGCAAGTGGTCGTACAACTGGTATTGTACTGGACTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCTCTTCCTCATGCTATTCTTCGGCTGGACCTGGCCGGTCGTGATCTTACAGATGCTTTGATGAAGATTCTAACAGAAAGAGGTTACATGTTTACAACTACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAAAAGCTTGCCTATGTTGCTCTTGACTATGAGCAGGAGCTTGAAACTGCAAAGAGTAGTTCCTCTGTTGAGAAGAACTATGAATTGCCTGATGGTCAAGTAATTACGATTGGAGCAGAGAGATTCCGTTGCCCTGAAGTCCTCTTCCAGCCATCTCTCATTGGAATGGAAGCTGCAGGAATTCATGAGACTACCTACAATTCGATTATGAAGTGTGACGTCGATATCAGAAAAGATCTGTATGGAAACATTGTCCTCAGTGGTGGTTCAACTATGTTCCCTGGAATTGCGGACAGAATGAGCAAGGAAATCACAGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCGATCCTCGCATCGCTCAGCACATTCCAGCAGATGTGGATCTCAAAGGGTGAGTATGATGAGTCGGGCCCATCTATTGTGCACAGGAAGTGCTTCTGA 1134 46.21 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9470857 9472266 - BLOR16795 Blo06g00212 61505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00212 377 PANTHER ACTIN 1 376 IPR004000 -
Blo06g00212 377 Gene3D - 140 340 - -
Blo06g00212 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Blo06g00212 377 PANTHER ACTIN 1 376 - -
Blo06g00212 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Blo06g00212 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Blo06g00212 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Blo06g00212 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Blo06g00212 377 PRINTS Actin signature 238 254 IPR004000 -
Blo06g00212 377 PRINTS Actin signature 51 62 IPR004000 -
Blo06g00212 377 PRINTS Actin signature 63 85 IPR004000 -
Blo06g00212 377 PRINTS Actin signature 142 161 IPR004000 -
Blo06g00212 377 PRINTS Actin signature 28 37 IPR004000 -
Blo06g00212 377 PRINTS Actin signature 117 130 IPR004000 -
Blo06g00212 377 Pfam Actin 5 377 IPR004000 -
Blo06g00212 377 SMART actin_3 7 377 IPR004000 -
Blo06g00212 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Blo06g00212 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Blo06g00212 377 Gene3D - 10 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00212 K10355 ACTF; actin, other eukaryote - zju:107425564 756.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00958 Blo-Chr4:11695906 Blo06g00212 Blo-Chr6:9470857 0 dispersed
Blo06g00212 Blo-Chr6:9470857 Blo16g00535 Blo-Chr16:22174140 0 dispersed
Blo05g00554 Blo-Chr5:11889754 Blo06g00212 Blo-Chr6:9470857 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.5e-215 743.8
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.8e-214 740.7
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.0e-214 740.3
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 8.5e-214 739.6
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 8.5e-214 739.6
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.9e-213 738.4
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.9e-213 738.4
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT2G37620 93.8 1.0e-203 706.1
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT2G37620 95.5 2.0e-199 691.8
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT2G37620 79.8 2.9e-161 565.1
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT2G37620 65.5 2.9e-129 458.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT5G59370 96.0 2.5e-213 738.0
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 3.2e-213 737.6
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.1
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.1e-212 734.9
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.3e-211 731.5
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT5G59370 95.0 5.2e-211 730.3
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.0
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.0
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT5G59370 93.8 1.5e-202 702.2
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT5G59370 95.5 7.7e-199 689.9
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT5G59370 80.9 4.0e-163 571.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT5G59370 65.3 1.2e-127 453.4
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G46520 96.3 1.1e-213 739.2
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.5e-213 738.8
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 737.3
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 9.4e-213 736.1
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 1.0e-211 732.6
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G46520 95.2 2.3e-211 731.5
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.1e-210 729.2
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.1e-210 729.2
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G46520 94.1 6.8e-203 703.4
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G46520 95.8 3.5e-199 691.0
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G46520 81.2 1.8e-163 572.4
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G46520 65.5 5.5e-128 454.5
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G12110 97.1 1.5e-215 745.3
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.5e-215 745.3
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 2.0e-215 745.0
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 741.9
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 1.5e-213 738.8
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 737.6
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 7.2e-213 736.5
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 7.2e-213 736.5
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G12110 93.8 8.0e-204 706.4
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G12110 96.6 4.8e-201 697.2
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G12110 81.2 1.1e-163 573.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G12110 66.6 1.2e-130 463.4
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 6.3e-209 723.4
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 6.3e-209 723.4
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 8.2e-209 723.0
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-208 720.3
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 718.8
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G18780 90.3 2.2e-198 688.3
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G18780 92.2 5.2e-195 677.2
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G18780 77.4 7.8e-159 557.0
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G18780 62.1 1.3e-124 443.4
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.2e-209 724.9
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.2e-209 724.9
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.8e-209 724.5
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-208 721.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 720.3
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT1G49240 90.3 2.2e-198 688.3
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT1G49240 92.4 1.8e-195 678.7
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT1G49240 77.7 2.7e-159 558.5
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT1G49240 62.3 4.3e-125 444.9
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT5G09810 98.9 1.3e-217 752.3
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.8e-217 751.1
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 6.3e-217 750.0
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 6.3e-217 750.0
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 3.8e-214 740.7
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 8.5e-214 739.6
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.5e-213 738.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT5G09810 94.1 1.4e-203 705.7
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT5G09810 96.1 5.4e-200 693.7
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT5G09810 80.4 1.3e-161 566.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT5G09810 65.8 1.7e-129 459.5
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 2.3e-57 218.4
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT2G19760 73.8 8.8e-49 189.9
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 75.6 3.7e-55 211.1
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT4G29350 74.6 6.7e-49 190.3
Blo16g01002 CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 151.4
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 1.2e-56 216.1
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT4G29340 77.0 5.4e-54 207.2
Blo08g00324 . 58 146 Cytoskeleton Gene Families AT4G29340 80.9 6.4e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00212 Blo_Chr06 FPKM 94.719765 97.973244 97.419991 101.43914 80.886887 64.131996 79.724426 120.335114 125.914078 127.818611