Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00237 ATGGTTATACCGGGGAGAGAGAGGGGACAATGTACGTATAGGGAGGCAGGGGGAGGCGGCACCAGCAGGGGGTGGTCGGCTCCGCGTGGTCTGGGGAATTTGCATCTTGAAAATTTACTTTTAGAGATGGCTAGTGGGTTCGGAGAATCAACTAGTGCAGCACCTCACATCCCTTTTAGTTCAAGCAATGGCAACAACCCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTCGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATCCAGGAAGAGAAGCTGGTTCCTCTTTATGGCAGGGGCAAAACTCATGCTGACCCTCGATCGAAATCATACCCTAGTTTCGATATTCCAAATCGCCCTTCAGGACAAAGGCCTGAAACGGCCCCTCCACCGCAAGCAAATCAGTTTACAAATCATGGGTTTGGATTTATGGGCGGATTTGCACCAATGGCATCCGCTAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTATTTCCGTCTTTATTTAACGTTCAGTTGCAAGGATATCCTGATGCCACTGTTTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCATGGTTTTCCCCAACCTCCAAACCGGGGGCAGCAGGCTGATAATGTACTGAAGAATCTCCTCTTGCTGATAGGTGTATTTGTGATTCTTGCTCTTCTTTGTTGTTAG 813 46.99 MVIPGRERGQCTYREAGGGGTSRGWSAPRGLGNLHLENLLLEMASGFGESTSAAPHIPFSSSNGNNPNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTHADPRSKSYPSFDIPNRPSGQRPETAPPPQANQFTNHGFGFMGGFAPMASARFGNFTLATAFGGLFPSLFNVQLQGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQQADNVLKNLLLLIGVFVILALLCC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11624933 11628903 - BLOR16820 Blo06g00237 61530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00237 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 137 IPR013083 -
Blo06g00237 270 MobiDBLite consensus disorder prediction 131 166 - -
Blo06g00237 270 ProSitePatterns Zinc finger RING-type signature. 91 100 IPR017907 -
Blo06g00237 270 ProSiteProfiles Zinc finger RING-type profile. 76 117 IPR001841 -
Blo06g00237 270 PANTHER RING ZINC FINGER PROTEIN-RELATED 44 269 - -
Blo06g00237 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 44 269 IPR045103 GO:0005783|GO:0006511|GO:0061630
Blo06g00237 270 SMART ring_2 76 116 IPR001841 -
Blo06g00237 270 CDD RING-HC_AtRMA_like 74 118 - -
Blo06g00237 270 MobiDBLite consensus disorder prediction 1 22 - -
Blo06g00237 270 SUPERFAMILY RING/U-box 72 129 - -
Blo06g00237 270 Pfam Zinc finger, C3HC4 type (RING finger) 76 116 IPR018957 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00237 Blo-Chr6:11624933 Blo12g00913 Blo-Chr12:27320350 1.29E-79 dispersed
Blo06g00237 Blo-Chr6:11624933 Blo04g01010 Blo-Chr4:13226923 6.32E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00237 K10666 - mnt:21392517 394.045