Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00279 ATGATGGAGACTCCATCTGGTGATTTACCATCTGAATCAAGTGTCAAAACATCTGCTGATAAAAATTTGACTTCTGATGTTTCATCACAAGATAATGCTGGCAGTCACTTAGCATCAAAGTTTTCTGCTTCTGGCGAATCATCTTGGGCTAGAAGTTTGAAATTTCCACAGCAATTGGGAGGAGAAGCAGAGCATCCAAAAGAAGGAAATGCCATGATGTCGACATTTGCACGTTTCACTGGTGGTTTTGGTTTGGGTGTTCCTTCAGTCACTTCAGAGCCAAATAAGGACAGTGCTGCAACGACTGCACAATATGGTGTCGTAGCGTCACTTACAAAAGGAATAGTTGATTCATCTCTTAGTGCTGTAAAAGCAATGCAGGTCAAGGCTCGACATATTGTGTCTCAGAAAAAAAGAAGATATCAGTCTTTGAAACTGATTGACTGTTTGCAGTTGTATAAAGAATACAACTCAGTAGTTCATTATTTTTGTTGCAAAAAACATCTGTTTTACTTCATTTCAGAAGGAGGTTTTGATTTAGATATGACTTATATCACCGAGAATGTCATTGCTATGGGATTCCCTGCTGGTGACATAAGCTCTGGGTTTTTTGGATATCTTGAGGGTTTTTATCGAAATCACATGGAAGAAGTGATCAAATTCTTTGAATCCCACCACCAGGGAAAGTACAAAGTATATAATCTTTGTTCAGAGCGGTTGTATGATGCTTCCTTGTTTGAAGGGAAGGTTGCGAATTTCCCATTTGATGATTATAACTGCCCACCTTTACATCTTATAAAATCATTTTGTCAAAGTGCGTATTCATGGCTAAAGGAGGACATTGAGAATGTTGTGGTTGTTCATTGTAAAGCTGGTATGGGAAGGACAGGCTTAATGATTTGTAGCCTTCTCTTGTTCATCAAGATGTTCCCAAAGGCTGAGGAAGCAATTAATTATTACAACCAGAAGAGATGTATTGATGGAAAGGCTTTGGTTCTCCCTAGTCAGATTAGGTATGTCAAATACTTTGAAAGCACTTTAACGTCTTCAAATGGAGAAAATCATCAAGGACGTAGGTGCATGCTTCGAGGTTTTCGGATTTACAAATGCCCTAATTGGCTTAGACCTTCCATTACAATTTCTGATCACCAAGCAGGAATTTTATTCTCGACTAGGAAACATCCAAAAACTAAGGATCTAATGCCAGAAGATTTCTGGCTTCGTGCAACAAAGAAAGGATTTGTGGTGTTTGCGCTACCTGGGGAACCTGGTCTAACTGAATTGATGGGAATCGCTGGATTAATTGGTGTTAGAGTAGTGGTTGTCGATGAAAAGAAGAGGGCTAGTTATGTAATCAAAAAACCTAAAAGAACCAGAAATGGAGGTGCAGGAAGAGATGATCTTGATCAAAAGGGAAGCATAGAAGAAGTCAAGGCCCTGGAAAGAAAAGATTGA 1455 39.18 MMETPSGDLPSESSVKTSADKNLTSDVSSQDNAGSHLASKFSASGESSWARSLKFPQQLGGEAEHPKEGNAMMSTFARFTGGFGLGVPSVTSEPNKDSAATTAQYGVVASLTKGIVDSSLSAVKAMQVKARHIVSQKKRRYQSLKLIDCLQLYKEYNSVVHYFCCKKHLFYFISEGGFDLDMTYITENVIAMGFPAGDISSGFFGYLEGFYRNHMEEVIKFFESHHQGKYKVYNLCSERLYDASLFEGKVANFPFDDYNCPPLHLIKSFCQSAYSWLKEDIENVVVVHCKAGMGRTGLMICSLLLFIKMFPKAEEAINYYNQKRCIDGKALVLPSQIRYVKYFESTLTSSNGENHQGRRCMLRGFRIYKCPNWLRPSITISDHQAGILFSTRKHPKTKDLMPEDFWLRATKKGFVVFALPGEPGLTELMGIAGLIGVRVVVVDEKKRASYVIKKPKRTRNGGAGRDDLDQKGSIEEVKALERKD 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15505319 15509441 + BLOR16862 Blo06g00279 61572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00279 484 ProSiteProfiles Phosphatase tensin-type domain profile. 171 350 IPR029023 -
Blo06g00279 484 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 11 143 - -
Blo06g00279 484 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 285 324 IPR000387 GO:0016311|GO:0016791
Blo06g00279 484 MobiDBLite consensus disorder prediction 7 42 - -
Blo06g00279 484 MobiDBLite consensus disorder prediction 1 42 - -
Blo06g00279 484 Gene3D Protein tyrosine phosphatase superfamily 166 363 IPR029021 -
Blo06g00279 484 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 174 430 - -
Blo06g00279 484 CDD PTP_PTEN 181 344 IPR045101 GO:0016791
Blo06g00279 484 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 184 347 IPR029021 -
Blo06g00279 484 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 174 430 - -
Blo06g00279 484 MobiDBLite consensus disorder prediction 453 484 - -
Blo06g00279 484 MobiDBLite consensus disorder prediction 459 484 - -
Blo06g00279 484 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 11 143 - -
Blo06g00279 484 ProSitePatterns Tyrosine specific protein phosphatases active site. 287 297 IPR016130 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00279 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - jre:109009112 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00279 Blo-Chr6:15505319 Blo17g00378 Blo-Chr17:4194493 4.94E-47 dispersed
Blo06g00279 Blo-Chr6:15505319 Blo13g00325 Blo-Chr13:18585588 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo01g01756 . 89 400 Protein tyrosine phosphatase (PTP) family AT1G71860 66.1 1.1e-122 436.8
Blo06g01155 . 18 910 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 5.3e-302 1033.9
Blo04g01221 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.3e-71 266.2
Blo04g00349 BCT 68 349 Protein tyrosine phosphatase (PTP) family AT3G52180 68.8 3.7e-113 404.8
Blo13g00691 BCT 114 387 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 8.6e-110 393.7
Blo04g00191 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.9 4.1e-112 401.4
Blo18g00335 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 4.6e-198 687.6
Blo02g00060 . 13 274 Protein tyrosine phosphatase (PTP) family AT2G32960 51.9 5.9e-65 244.6
Blo13g00337 BCT 169 350 Protein tyrosine phosphatase (PTP) family AT2G32960 64.6 5.9e-65 244.6
Blo17g00522 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 5.3e-50 194.9
Blo04g01214 BCT 24 150 Protein tyrosine phosphatase (PTP) family AT2G32960 54.9 1.6e-38 156.8
Blo03g00441 . 55 384 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.8e-98 356.3
Blo01g00533 . 6 265 Protein tyrosine phosphatase (PTP) family AT2G35680 53.0 5.5e-79 291.6
Blo01g00533 . 27 201 Protein tyrosine phosphatase (PTP) family AT5G56610 53.1 4.9e-45 177.9
Blo13g00337 BCT 148 350 Protein tyrosine phosphatase (PTP) family AT4G03960 55.6 2.1e-62 235.7
Blo17g00522 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 58.3 1.4e-53 206.5
Blo04g01214 BCT 25 141 Protein tyrosine phosphatase (PTP) family AT4G03960 64.1 2.3e-40 162.5
Blo17g00522 . 3 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.7 7.1e-82 300.4
Blo13g00337 BCT 160 347 Protein tyrosine phosphatase (PTP) family AT3G02800 53.7 2.0e-52 202.6
Blo04g00099 BCT 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.5 2.9e-59 227.3
Blo13g00894 BCT 5 184 Protein tyrosine phosphatase (PTP) family AT3G55270 65.4 6.6e-59 226.1
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00325 . 29 602 Protein tyrosine phosphatase (PTP) family AT3G19420 68.5 1.2e-228 789.6
Blo04g01266 . 533 1110 Protein tyrosine phosphatase (PTP) family AT3G19420 68.0 2.7e-225 778.5
Blo06g00279 . 31 430 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 6.5e-147 518.1
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo03g00118 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.0 8.7e-108 387.1
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 1.9e-285 978.4
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 2.0e-258 888.6
Blo07g01154 . 83 664 Protein tyrosine phosphatase (PTP) family AT5G28210 57.7 2.5e-186 649.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00279 Blo_Chr06 FPKM 24.524845 31.128519 9.305623 9.944164 11.9273 9.481708 8.091797 2.570922 1.610597 2.189613