Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00290 ATGATGCAAGATCTGTGGAACGGTGCAAAGCTGGGTCTGAGACCCACCAAATCGGCTCCTTCTTCACCGGCCAAGCCTCTAAGCTTGTCTAGAACTCGGTCAGACGCCTTTCATGTAACTCATAAAGTCCCAGTCGGAGATTCACCGTATGTTCGAGCAAAGAACGTTCAGTTGGTCGACAAGGATCCAGACAAAGCGATTCCACTTTTCTGGGCAGCCATTAATGCTGGTGATAGAGTAGATAGTGCACTAAAAGACATGGCTATCGTTATGAAGCAGCAGAACAGGGCTGAAGAAGCCATTGAAGCGATTAAATCGCTTAGACATCGTTGCTCCGACGTAGCCCAGGAGTCGCTTGACAATATTCTTCTGGATCTTTACAAGAGGTGTGGTAGATTGGAAGACCAAATAGATCTTCTGAAGTACAAATTACTTCTAATTCAACAAGGTTTGGCTTTCAACGGGAAGCGAACTAAGACTGCCAGATCGCAGGGGAAGAAATTCCAAGTGTCAGTTGAACAAGAAGCCACTCGACTGCTAGGAAACTTGGGGTGGGCGTTGATGCAGCAGAATAACTACATCGAGGCGGAAGACGCTTATCGAAGAGCACTTTCGATCGCGCCTGACAATAACAAAATGTGCAACCTGGGCATATGTTTGATGAAACAAGGAAGAATAACAGAGGCTAAAGACAATCTCCGACGAGTGAGACCTGCGGTTTCCGACGGTCCTAGAGGCACAGACTCTCACCTCAAAGCCTACGAAAGGGCGCAGCAGATGCTCAAGGACCTTGAATCGGAGATGATGAACAGGGGCGGCGATAGGCTGGAGCAGAGCCGGCTCTTCGACGCCTTTCTGGGTTCATCTTCAATTTGGCAGCCGCAGCCTTGCAAGGACCATACTGTCAAAACAACGCAGCCTGAATTTGCCGACGAGAATATAGACACAAACAGAGCCGTAAATCAGAACACTATTTTGCAGCAGCCCAGATTTACGAAATCAATTCCTCAAAGTGGAGTTTCATTGAACGTTTCTGCACAGCCGTTCTACTCGTCGATGGGAAACAACATCCCATTGGCCGAAGGGCTTAAGAGAACAAGGTCTGGGAATGCAGCCATGGGAGGGGAAATGGTGAGGCCTGAAACGAAGACAAGAAGGCTAAGTTTTGAAGACACTGCAGATAGTAAAACATTGGAGATGCTGTTACCTGGGGATGAAGACTTCCAGGAGGCAATCATGGCTGCAGTTTTAGGACCACCACCAAATGAAACTGGGAAGGCAGCGAATAATAATAATAATAGTAGGAAGATAGAGAAGAGGCTTAAAGTGTTTCAAGACATTACTACACTTTCATTGAGTCCTAGGGCA 1368 47.22 MMQDLWNGAKLGLRPTKSAPSSPAKPLSLSRTRSDAFHVTHKVPVGDSPYVRAKNVQLVDKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRHRCSDVAQESLDNILLDLYKRCGRLEDQIDLLKYKLLLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRITEAKDNLRRVRPAVSDGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQSRLFDAFLGSSSIWQPQPCKDHTVKTTQPEFADENIDTNRAVNQNTILQQPRFTKSIPQSGVSLNVSAQPFYSSMGNNIPLAEGLKRTRSGNAAMGGEMVRPETKTRRLSFEDTADSKTLEMLLPGDEDFQEAIMAAVLGPPPNETGKAANNNNNSRKIEKRLKVFQDITTLSLSPRA 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16088271 16089871 - BLOR16873 Blo06g00290 61583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00290 456 SUPERFAMILY TPR-like 58 284 IPR011990 GO:0005515
Blo06g00290 456 Pfam Tetratricopeptide repeat 179 210 IPR001440 GO:0005515
Blo06g00290 456 Coils Coil 90 117 - -
Blo06g00290 456 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Blo06g00290 456 Coils Coil 247 267 - -
Blo06g00290 456 Gene3D Tetratricopeptide repeat domain 50 272 IPR011990 GO:0005515
Blo06g00290 456 SMART tpr_5 177 210 IPR019734 GO:0005515
Blo06g00290 456 MobiDBLite consensus disorder prediction 11 33 - -
Blo06g00290 456 PANTHER PROTEIN POLLENLESS 3-LIKE 2 11 450 - -
Blo06g00290 456 PANTHER PROTEIN POLLENLESS 3-LIKE 2 11 450 IPR044961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00290 - - - qsu:112035432 649.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00290 Blo-Chr6:16088271 Blo11g00166 Blo-Chr11:1293237 1.66E-88 dispersed
Blo06g00290 Blo-Chr6:16088271 Blo07g00298 Blo-Chr7:3457749 8.00E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1144 . . . Bda10g00208 . . . . . . Cma03g00674 . Car03g00619 . . Cpe19g00869 . . . . . . . . . . . . . . . . . . . Lsi01g00585 . . . . Blo06g00290 . . . . . . . Cmo03g00698 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00556 .
Vvi7g959 . . . Bda10g00001 . . . Bma15g01121 Cmo03g00967 Cmo07g00675 . . . . Sed06g0489 Cpe19g00656 . Bhi03g01010 Tan03g1636 . . Hepe04g1297 . . . . . . . . . Cone6ag1443 Cone9ag1368 . . Lsi01g00919 Csa06g03001 . Cme08g00627 . Blo06g00290 . . . . . . . . . Cma03g00939 Cma07g00665 Car03g00845 . Cpe10g00467 . . . . . . . . . . . . . . . . . Chy02g00859 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00290 Blo_Chr06 FPKM 2.826087 3.424579 4.411626 3.65036 2.986619 2.765481 3.232605 5.29557 4.875821 4.511324