Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00329 ATGGAACGCAGCATTTCACAGATTCAAGAGCAAATGAAAAGGATATGGGAAAGATTCGAAGAATCAGAAACTCTTTCTGATCAGTTGCTGAAAGAGGCGGAAGACGAAGAATCACCCGAGGAAGGAGAAGGAGAAGCGATGGTCGATGCAATCTGTCACGAACAAACAGTCACGCTCGAAGATCTGAAAAGTCTCGACTGCAGGAAAAGAGGAGTCGGCGACGACGGAAATGGCGGAACCAGAGATGTCGGTGGAGTAACCGACGTCGATGGCAGAGACGCAGATGGAGGACACGTCGATGGAAGAAACTGTTCGAAGTTTGAGCTGGCAGCGGTTGCTATGGATGAGTTGGCAGATTTCGATGCAGGAAACGTCAATGAAGGTGGAAGGAACTGTTTGATGGTTTCATTGGATGAGCTGGCAATGATATTTGCAAAGATGGAAGGACAAAAACACCCTTTTCTAGACACCAATTTCATTCCAGAAGCCCAAATGCAATGCAGAAGAGTTAATGGGCCAAATTTTTCAGAAACCCTAATCTGGTGTTATGGAGTTAATGGACCAGCTTCAACCACGAAGATTACCTCGGTGAAGATGGCTGGTCGTAGAGGAGACAGTAAGGACAGTTCGGTGGAAGACAGAGTGGGGCAGGTCCGGGAGGAGATGAGAATGGAGATAAAAATGGAGATGGGTGCCCTGCGTGAAGAAATTTCCTTGGAGATAGGAGCATTACGGGGAGATATCTCGGCCATACTCGAGCAACTCGCATCTCTGTCGACTAGGTTGCAGAGAGACGAAGTGTCTCTGTCAAAGGCAGCAGGAAAACAAAAAATAGAGGAAGACAAGTACTGCATACGTGCTAAACGCATATTTAGTGAATTGCAGCAGCGGCCTTTTGTAGTGGAGTTAGACCTAAGAGATGATGGAGGTCAAATTCAGAATGTACTTCTAGATTTGGTTGGTCGAGGTACAGTGCCTCAAGTATTTGTGCAGGGCAAGCATATTGGTGGATCTGATGATCTCAGGGCTGCTTTCAATAGTGGTCAGTTGCAAAAGCTTCTAAGTGCTAGATAA 1074 46.46 MERSISQIQEQMKRIWERFEESETLSDQLLKEAEDEESPEEGEGEAMVDAICHEQTVTLEDLKSLDCRKRGVGDDGNGGTRDVGGVTDVDGRDADGGHVDGRNCSKFELAAVAMDELADFDAGNVNEGGRNCLMVSLDELAMIFAKMEGQKHPFLDTNFIPEAQMQCRRVNGPNFSETLIWCYGVNGPASTTKITSVKMAGRRGDSKDSSVEDRVGQVREEMRMEIKMEMGALREEISLEIGALRGDISAILEQLASLSTRLQRDEVSLSKAAGKQKIEEDKYCIRAKRIFSELQQRPFVVELDLRDDGGQIQNVLLDLVGRGTVPQVFVQGKHIGGSDDLRAAFNSGQLQKLLSAR 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19134661 19139082 + BLOR16912 Blo06g00329 61622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00329 357 MobiDBLite consensus disorder prediction 69 94 - -
Blo06g00329 357 Gene3D Glutaredoxin 269 357 - -
Blo06g00329 357 SUPERFAMILY Thioredoxin-like 282 355 IPR036249 -
Blo06g00329 357 Pfam Glutaredoxin 283 335 IPR002109 -
Blo06g00329 357 MobiDBLite consensus disorder prediction 23 44 - -
Blo06g00329 357 PANTHER GLUTAREDOXIN-C3 282 356 - -
Blo06g00329 357 PRINTS Glutaredoxin signature 318 331 IPR014025 -
Blo06g00329 357 PRINTS Glutaredoxin signature 332 345 IPR014025 -
Blo06g00329 357 ProSiteProfiles Glutaredoxin domain profile. 260 357 - -
Blo06g00329 357 PANTHER GLUTAREDOXIN 2 282 356 - -
Blo06g00329 357 CDD GRX_GRXh_1_2_like 283 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00329 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - jre:109008652 125.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00329 Blo-Chr6:19134661 Blo11g00326 Blo-Chr11:2669230 2.60E-45 dispersed
Blo16g00933 Blo-Chr16:37411193 Blo06g00329 Blo-Chr6:19134661 9.50E-21 dispersed
Blo17g00304 Blo-Chr17:3201229 Blo06g00329 Blo-Chr6:19134661 4.30E-13 dispersed
Blo06g00329 Blo-Chr6:19134661 Blo01g01650 Blo-Chr1:56287293 1.06E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015289 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00329 Blo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0