Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00338 ATGGCGTCTTCGCTGTCATTGCTCTCGTCCGTTCTGAACCAGCCTCAGTGTGCTCTACGATTGAGGATCAACGGAAGGTTGCGCCTCAGCGTCAGATATTTATCCTCGAAAATGGATGCTTCTGGTTTGTGCTGCTACACGGCTGGTGCATTCCGGAGGAGTTTAGGTTTCAATTTCTCCAAAAACTTCTCGGAGTGTCATTCTTCTCGGAACAAAGATTTTCAGATCCTTAGACTGCGTAATTCAGCTATAACAGCTTCAGAATCTCCGTTAGACTCTGTACCAGATTCTGAAGTATCTTTGAGAGGTCGTATATATCACGAGACTTATGGGTGTCAAATGAATATCAATGATATGGAGATTGTCCTATCTATCATGAAGAATGCAGGATATAGCGAACTTGTTGATGTTCCTGAGAGCGCAGAAGTAATTTTCATCAATACATGTGCTATCAGGGATAATGCCGAGCAAAAGGTCTGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCACTGGAAGAGTAATGTTGCCATAGGAAGGTCTCAGTCTCTTCGCCCTCCAAAAGTAGTTGTTTTAGGATGCATGGCTGAAAGGTTAAAAGACAAGATACTGGATTCAGACAAGATGGTAGATGTGGTTTGTGGTCCTGATGCTTACAGGGACCTGCCAAGATTATTGGAGGAAGTCGAATATGGTCAAAAAGGAATCAATACACTTCTTTCTCTTGAAGAAACTTATGCAGATATTAATCCGGTACGAATTTCCAAAAATTCTGTCACTGCTTTTGTCTCCATCATGAGGGGTTGCAATAATATGTGCTCGTTTTGCATTGTTCCTTTCACTAGAGGCAGAGAAAGATCTCGTCCAGTGGAATCAATTGTGAGGGAAGTGGCTGAACTTTCCAAAGAAGGTGTGAAAGAGGTTACACTTCTTGGTCAGAATGTTAATAGCTATAATGATGCATCTGGTGAAGAAACAGAAGTTGAACCGGGAAGTAATTGGAAGTTTAGTGAAGGCTTTTCGAGCATGTGCAAGGTAAAGAAAATGGGTTTGAGATTTTCTGATCTCTTGGATCGACTTTCTTTTAAATTTCCTGAAATGAGATTCAGATTTACATCTCCACATCCGAAGGACTTTCCTGATGAACTACTCTATTTAATGCGAGATAGAAGTAATATTTGCAAATATATCCATTTACCTGCACAAAGTGGAAGTAACACAGTTCTTGAAAAAATGCGACGAGGTTATACCCGGGAAGCCTACTTGGAACTTGTGGACAAGATACGGAAAATCATTCCAGATGTGGGACTAAGCAGTGATTTCATGTGTGGATTCTGTGAAGAAACGGAGGAAGAACATGCAGAAACTTTAAGCCTTATCAAAGCTGTGGGCTACGACATGTCTTACATGTTTGCCTATAGCATGAGGGATAAAACTCATGCCCATCGAAATTACGTCGATGATGTTCCAGACAAAATAAAGCAGAGAAGGCTAACTGAACTCATTGAGGCTTTTCGGGAGAGCACAGGCCAGTGCTTTGATTCGCAGATAGGCACCTTTCAACTTGTACTAGTTGAAGGACCCAATAAGAGAGCTCCAACAACAGAGCTGATTGGCAAAACTGACAGAGGCCATAGAGTTTCTTTTGTTAATCAGCCAGTTCCCCATCGAGACACCGATTTCAAGGGGAAAAGATGCCCAGTGGTGGGAGATTTTGTTGAAGTTCTTATATCTAAGTCGACTCGAGCATCGCTCTTTGGAGAGGTACTTGCCATTTCTAAAATAAGTTCCTTTTACATTAACTTGGATAGAGAATCTGTTGCCTGCTGCAGTAGTTGA 1842 41.69 MASSLSLLSSVLNQPQCALRLRINGRLRLSVRYLSSKMDASGLCCYTAGAFRRSLGFNFSKNFSECHSSRNKDFQILRLRNSAITASESPLDSVPDSEVSLRGRIYHETYGCQMNINDMEIVLSIMKNAGYSELVDVPESAEVIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVAIGRSQSLRPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADINPVRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELSKEGVKEVTLLGQNVNSYNDASGEETEVEPGSNWKFSEGFSSMCKVKKMGLRFSDLLDRLSFKFPEMRFRFTSPHPKDFPDELLYLMRDRSNICKYIHLPAQSGSNTVLEKMRRGYTREAYLELVDKIRKIIPDVGLSSDFMCGFCEETEEEHAETLSLIKAVGYDMSYMFAYSMRDKTHAHRNYVDDVPDKIKQRRLTELIEAFRESTGQCFDSQIGTFQLVLVEGPNKRAPTTELIGKTDRGHRVSFVNQPVPHRDTDFKGKRCPVVGDFVEVLISKSTRASLFGEVLAISKISSFYINLDRESVACCSS 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20226659 20229284 - BLOR16921 Blo06g00338 61631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00338 613 Gene3D - 104 246 IPR038135 -
Blo06g00338 613 Pfam Radical SAM superfamily 264 461 IPR007197 GO:0003824|GO:0051536
Blo06g00338 613 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 103 592 IPR006463 GO:0006400|GO:0016740|GO:0051539
Blo06g00338 613 CDD Radical_SAM 264 494 - -
Blo06g00338 613 SFLD CDK5RAP1 102 596 - -
Blo06g00338 613 Pfam Uncharacterized protein family UPF0004 104 216 IPR013848 GO:0035596|GO:0051539
Blo06g00338 613 SFLD Radical SAM 102 596 IPR007197 GO:0003824|GO:0051536
Blo06g00338 613 SUPERFAMILY Radical SAM enzymes 254 508 - -
Blo06g00338 613 ProSiteProfiles Radical SAM core domain profile. 256 512 IPR007197 GO:0003824|GO:0051536
Blo06g00338 613 SMART MiaB 260 501 IPR006638 GO:0003824|GO:0051536
Blo06g00338 613 SFLD B12-binding domain containing 185 465 - -
Blo06g00338 613 ProSiteProfiles TRAM domain profile. 515 592 IPR002792 -
Blo06g00338 613 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 103 232 IPR013848 GO:0035596|GO:0051539
Blo06g00338 613 Pfam TRAM domain 515 591 IPR002792 -
Blo06g00338 613 ProSitePatterns Methylthiotransferase radical SAM domain signature. 264 284 IPR020612 GO:0051539
Blo06g00338 613 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 81 602 - -
Blo06g00338 613 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 104 553 IPR005839 GO:0006400|GO:0016740|GO:0051539
Blo06g00338 613 Gene3D tm_1862 like domain 258 516 IPR023404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00338 - - - zju:107424556 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00338 Blo-Chr6:20226659 Blo11g00071 Blo-Chr11:534827 1.86E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1052 . . . Bda10g00151 . . . Bma15g00978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00338 . . Bpe10g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011095 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00338 Blo_Chr06 FPKM 2.40404 1.580505 2.985167 2.793928 3.186637 2.502415 4.287391 0.0 0.0 0.207188