Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00377 ATGCTTCAGTTGGGATCTTCACTCAACGCTCACCTAGAAACCTTGGATAGGTGCATGGATGATTTAGCATGTGGTATCTGGACCACCGGTTACTACTTGAGGAGATCAATCTTGATAACTTCAGTTCCAATTGACAAGTTTGGTGGGGGTCAAGTTCTGTTTGCTTGTTCAAGACGATTCTTGGGTTCTATTCCATCATGGGTTGTTGGGTGTCAGAGGGATGATGACAAATGGGAACATGATCTTTATGAGGATAATGAATCCCAAGCTTCAAATCGGAAAGTTGGTGCTCGTGATCTTCGTTTGAAGTTGCAGAAGAAAAGTCTCCATGCGCCTCAAAGTGGAAAGAGCTCTATGTCAGGGGTGCGGGATCTGCGAGAAAAGTTGTCTGTCCCTGTATATTCAGTAACTGTGAATAATAATCCTCCAAAGCCAAAATTAGAAGCTGCTAAATCAGCCAAGAAAAATGAAACCGTTGATGCTCCTCCAGCAAATGATACCTCAGTAGATGGCTTTTTACACTGCTTGGGTCTTGAAAAATACTCCATTACTTTTCAAGCTGAAGAAGTTGATATGGCTGCTCTTGTACATATGAGTGATGAGGACCTCAAAGCTTTAGGCATACCGATGAGTTCCCATGAAATTGGTATCAGAGCAGTTCTGGGATGGCTGGAAAAAAATCTAATGTGCGTTTGGATTCTGTGGAAGAGAAATTGGAAGCGGGGTGGGCATTTCGGATTTCGGGTTTCGGTTTCGGTTTCGGTTTCGGTTCCGGACCGTCCGGAACCGAGTAGTCGGTTCTCGGTTCCGAGAAGCTGGTATCGAACCCGGAACTGTTCGGGTCTGGAACCGAACCCAGAACCGAGGTTGGTTCCGGGTCCGGAACTGGCGGTTCTCATTGGGAGGTCGATTAGAGCTTTCAGCCAAGCGAAAACGAGCGTAGTATCATCAAGAACATTTCTAGAAACATCAAGCAACTTTGTCGTTGCAAATCGCAGTGGCAAGGCTTCACGGTGTTCGTCGACTCGTCGCTCGCAGGCTCGCAGCTTCGTAGTGTTCGTCGCACCTTCTCAGTCCTCGTCGCAGTCGTCGTCTCTCAGCTTTCAATCGCAGTCGTCACTCGTTGTCTCTCGGAATCGGAATCGATCACGCGTGCCGCCGTTTGGCAACTGGGACAGCCAAGGGAATGTTCCTTACACTGTTGTTTTCGACAAGGCTCGAAGAGGTCGACCTGGATCGTTAATGGTGACCCCAAACGAACCGGAGGATAATTGCAGTGTATTATCCGACAATCCAGATTCCCATGGAGCCCCACCATATTCCCAGAGCAGAAATGAGCCAAGTGATCCGGTGAGGCAAGAGCCGGTTCGATCAGTGCATGAAAGGATGATTAGCAGGGAAGATGCTGGACTTAAGCAATTTCCTGACCCTTCACCTAATCAAGACAATCTGGGCCAGAAAACTACTCGGGAGGCTATGCATCAGCGGCCAGGAGACCGCGATGGATGGTCCAACAGATATGATCAAAGTGTTGATCGTTCCCCACTTCATCGTCAGGGTAGAGGCAGAGAAAGTACGGCTTGGGAAGGAAATCGAACGTATGAAAGTTGGCAAGGAGCTCCGGCAAAGACTCGAATGAAGCCAGCTAATAATAGCCGAAACAACGAAAACATTGAAAAGGCAGCTTCTGTTCCACCATTTGGTGTTTGGAATGTGGATGCTGCATCAGCTGACGGCTATACGCATATGTTTAACAAAGTGAGGGAGGAGAAACATAATCCACCCAGAAAAGATGCTGAAATGCGCAGTCCACACCCTTACACCAACGCTAATAGCAACAACATTCCCGTTCCAAAGAAGGTTAAACGGGGATATCTCAAGGATGTTAGGGCTGAAAACACAACACGGTCCAAAATGGTTTCCGAAACAACCCAAAAACAATCGGGTCAAAATTTAGGAGTGAAGACTGCGAAGTTTGCTGTTCATTCCTTGGTTGCCTTCTTCAGCAAAGTTATCTTGCGTCTCGACTTCCAACTCAGTATTTTCGGATCATAA 2055 47.25 MLQLGSSLNAHLETLDRCMDDLACGIWTTGYYLRRSILITSVPIDKFGGGQVLFACSRRFLGSIPSWVVGCQRDDDKWEHDLYEDNESQASNRKVGARDLRLKLQKKSLHAPQSGKSSMSGVRDLREKLSVPVYSVTVNNNPPKPKLEAAKSAKKNETVDAPPANDTSVDGFLHCLGLEKYSITFQAEEVDMAALVHMSDEDLKALGIPMSSHEIGIRAVLGWLEKNLMCVWILWKRNWKRGGHFGFRVSVSVSVSVPDRPEPSSRFSVPRSWYRTRNCSGLEPNPEPRLVPGPELAVLIGRSIRAFSQAKTSVVSSRTFLETSSNFVVANRSGKASRCSSTRRSQARSFVVFVAPSQSSSQSSSLSFQSQSSLVVSRNRNRSRVPPFGNWDSQGNVPYTVVFDKARRGRPGSLMVTPNEPEDNCSVLSDNPDSHGAPPYSQSRNEPSDPVRQEPVRSVHERMISREDAGLKQFPDPSPNQDNLGQKTTREAMHQRPGDRDGWSNRYDQSVDRSPLHRQGRGRESTAWEGNRTYESWQGAPAKTRMKPANNSRNNENIEKAASVPPFGVWNVDAASADGYTHMFNKVREEKHNPPRKDAEMRSPHPYTNANSNNIPVPKKVKRGYLKDVRAENTTRSKMVSETTQKQSGQNLGVKTAKFAVHSLVAFFSKVILRLDFQLSIFGS 684
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 22306181 22327524 + BLOR16960 Blo06g00377 61670
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00377 684 Gene3D - 166 222 IPR013761 -
Blo06g00377 684 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 381 597 - -
Blo06g00377 684 MobiDBLite consensus disorder prediction 589 623 - -
Blo06g00377 684 MobiDBLite consensus disorder prediction 361 391 - -
Blo06g00377 684 Pfam SAM domain (Sterile alpha motif) 167 213 IPR001660 GO:0005515
Blo06g00377 684 MobiDBLite consensus disorder prediction 589 603 - -
Blo06g00377 684 MobiDBLite consensus disorder prediction 140 164 - -
Blo06g00377 684 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 381 597 IPR040387 -
Blo06g00377 684 MobiDBLite consensus disorder prediction 629 648 - -
Blo06g00377 684 MobiDBLite consensus disorder prediction 450 469 - -
Blo06g00377 684 MobiDBLite consensus disorder prediction 410 553 - -
Blo06g00377 684 CDD SAM_superfamily 168 208 - -
Blo06g00377 684 MobiDBLite consensus disorder prediction 492 525 - -
Blo06g00377 684 ProSiteProfiles SAM domain profile. 164 227 IPR001660 GO:0005515
Blo06g00377 684 MobiDBLite consensus disorder prediction 419 449 - -
Blo06g00377 684 SMART SAM_4 161 226 IPR001660 GO:0005515
Blo06g00377 684 MobiDBLite consensus disorder prediction 476 490 - -
Blo06g00377 684 SUPERFAMILY SAM/Pointed domain 165 219 IPR013761 -
Blo06g00377 684 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 382 410 IPR008700 -
Blo06g00377 684 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 559 592 IPR008700 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Blo06g00377 Blo06g00101 CCT
Blo05g00432 Blo06g00377 BCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00377 Blo-Chr6:22306181 Blo07g01076 Blo-Chr7:30584614 2.24E-17 dispersed
Blo16g00674 Blo-Chr16:26312714 Blo06g00377 Blo-Chr6:22306181 1.30E-07 dispersed
Blo05g00432 Blo-Chr5:5822304 Blo06g00377 Blo-Chr6:22306181 5.07E-71 transposed
Blo17g00341 Blo-Chr17:3583546 Blo06g00377 Blo-Chr6:22306181 8.20E-12 transposed
Blo10g00596 Blo-Chr10:17804995 Blo06g00377 Blo-Chr6:22306181 2.24E-45 wgd
Blo05g00428 Blo-Chr5:5789002 Blo06g00377 Blo-Chr6:22306181 9.14E-81 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00377 - K13456 qsu:112004986 199.134