Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Blo06g00405	ATGAGTTCTTCTTCATGCTTCCAGTTTCATGATTTTGATCATCTTTCTTCTGATTCTTTCTTTGGGTATCGAGAAAGCTGCGATTCAAGGAATGAGATATTTTCCAAGAACAATAATGATCTCCCTTTCAATGTACATGACTCCGACGAGATGATTTTGATCGACGTTCTCACGAGAGGAGTTGAAGAAGCCATGAAAACGAACTCTTTCCAAGCTAAGGAAGAAGGAGAAGAAGTGGCGAGGTTGGAGGCCAAGGGAGAATCCATGGAAGAAGGGCCAAGAAAGGAGAAGAGCTACAGAGGGGTCCGACGGCGGCCGTGGGGGAAGTACGCGGCGGAGATCAGGGATTCGACCAGGCATGGAATCCGGGTCTGGTTAGGGACGTTCGAGAGCGCGGAAGCGGCTGCTTTGGCATACGATCAAGCGGCGTTTTCCATGAGAGGCTACGGGGCGGTGTTGAATTTTCCGGTGGAAATGGTGGTGCAATCTCTGCAAGAAATGGGTCAAATAAAAGGTTGGGAAGGCGATGACAGTTGTTCGCCGGTAATGGCGCTCAAGAGGAAACACTGTACAAGTAGGAAGACGACGACGTATAGAAGGAAGAGAAGCAAAGAAATTATAGAGGAGAAAATACAGAGAAACTTGCTGGTTTTGGAGGATTTGGGTGCAGATTACTTGGAGGAGCTTCTGAGTTCAAGCTCTTGA	705	47.8	MSSSSCFQFHDFDHLSSDSFFGYRESCDSRNEIFSKNNNDLPFNVHDSDEMILIDVLTRGVEEAMKTNSFQAKEEGEEVARLEAKGESMEEGPRKEKSYRGVRRRPWGKYAAEIRDSTRHGIRVWLGTFESAEAAALAYDQAAFSMRGYGAVLNFPVEMVVQSLQEMGQIKGWEGDDSCSPVMALKRKHCTSRKTTTYRRKRSKEIIEEKIQRNLLVLEDLGADYLEELLSSSS	234

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	23378165	23378869	-	BLOR16988	Blo06g00405	61698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Blo06g00405	234	CDD	AP2	97	157	IPR001471	GO:0003700\|GO:0006355
	Blo06g00405	234	PANTHER	DNA-BINDING DOMAIN	31	232	IPR044808	GO:0003700\|GO:0009873
	Blo06g00405	234	SMART	rav1_2	98	162	IPR001471	GO:0003700\|GO:0006355
	Blo06g00405	234	Gene3D	AP2/ERF domain	97	158	IPR036955	GO:0003700\|GO:0006355
	Blo06g00405	234	Pfam	AP2 domain	98	148	IPR001471	GO:0003700\|GO:0006355
	Blo06g00405	234	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B	31	232	-	-
	Blo06g00405	234	PRINTS	Ethylene responsive element binding protein signature	99	110	IPR001471	GO:0003700\|GO:0006355
	Blo06g00405	234	PRINTS	Ethylene responsive element binding protein signature	122	138	IPR001471	GO:0003700\|GO:0006355
	Blo06g00405	234	ProSiteProfiles	AP2/ERF domain profile.	98	156	IPR001471	GO:0003700\|GO:0006355
	Blo06g00405	234	SUPERFAMILY	DNA-binding domain	98	158	IPR016177	GO:0003677

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Blo06g00405	Blo07g01031	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Blo06g00405	Blo-Chr6:23378165	Blo10g00644	Blo-Chr10:20106488	7.41E-58	dispersed
	Blo06g00405	Blo-Chr6:23378165	Blo07g01031	Blo-Chr7:30140539	5.02E-59	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	12471	PF00847	AP2	1.30E-13	CL0081	Blo	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Blo06g00405	K14516		-	pop:18101603	210.69