Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00421 ATGATGTTTCCTGCTGCCATCTCCAATTCAACTTCCTTGTCTGAGGAAGCTAGCGTCTCTTCTGGTACTAAAGTTCAGGACTTTGGCTGTTTAAATCCACCTCTTTCAATTATCTCTGATCCTCAACCATCTGATCAAAAGATTAAGAAAAAAAGAAGCCTACCAGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCTCCAAAAACCTTATTAGCTACGAATAGATTTGTGTGTGAGATTTGCAGCAAAGGGTTTCAGAGAGATCAAAATCTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAACTGAAGCAGAGAAACAGCAAAGAGATTAAAAAGAAGGCTTATGTTTGCCCAGAACCTTCTTGCGTTCATCATCATCCTTCTAGAGCTCTAGGCGATTTAACTGGGATTAAGAAACATTTCTGCAGAAAACATGGGGAGAAAAAATGGAAATGCGAGAAATGCTCAAAGATCTACGCAGTTCAATCAGATTGGAAGGCGCACTCCAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATCACACACAGAGCATTCTGCGATGCTTTAGCAGAAGAAAGTGCAAGACTTTCAGCAAACCAAATGGCCCTAACCGGCATTTCCGCCCCCGCCGCCACTACTGACGAAAAGCTCCAACCTTTCTTCCCTTTCTCTTCCCACCACCACTTTCGGCACCCAAACCTAAAATCTATCCCTAACAGCAATCTCCTCCAAAACCCACTTCATATAAAGACCGAAAGAGATCATTACCTTTTCGAAATCCCACCAACCACCTCTTTCTCCACAATTTCAACCACCACCACCACCACCATCCCTTCACTCTTGATGCACGATCTTCCCCCACCGTTCGGCCACCCCATGCATGCAACGTCGACGTCAACAGCACTGTCAGCCACTGCGCTGCTCCAGAAGGCTGCCACCATTGGGGCTGCGCCAACTTCTGCACAACAAGCGCAGTGTGTGGGCCACATGGCTCACGCCCACCTCGACATTGGTGAGTTCGGCAGGGGGAGTGAGATGAACTCAGTGAGCTACATCTCACCGGAGTATCATCTTGGTGGGCTCACTTCCTCCAGCCTCACCTCCACGTGGCATACCAGTGATCGTCTGACGAGGGACTTTCTCGGTCTGACAAGCGTTGGCCATGGAGGAGGTTCTGAGGGCGGAGGTAGAAATGGAAAAGATGCTAACGTTAGCATAACCATAAAAGATATGCTAACGTACCCAAGGGGTTTACAATTTGAACAGTACGAGCGCGACCAACCAATGTTCAAGCCTCATGGCTACGGGTTCGCTGAGCCGGCGGCGTCGGAAACGTGGACGGATTGCTAG 1398 48.07 MMFPAAISNSTSLSEEASVSSGTKVQDFGCLNPPLSIISDPQPSDQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQMALTGISAPAATTDEKLQPFFPFSSHHHFRHPNLKSIPNSNLLQNPLHIKTERDHYLFEIPPTTSFSTISTTTTTTIPSLLMHDLPPPFGHPMHATSTSTALSATALLQKAATIGAAPTSAQQAQCVGHMAHAHLDIGEFGRGSEMNSVSYISPEYHLGGLTSSSLTSTWHTSDRLTRDFLGLTSVGHGGGSEGGGRNGKDANVSITIKDMLTYPRGLQFEQYERDQPMFKPHGYGFAEPAASETWTDC 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24350637 24353435 + BLOR17004 Blo06g00421 61714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00421 465 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Blo06g00421 465 SMART c2h2final6 78 100 IPR013087 -
Blo06g00421 465 SMART c2h2final6 154 174 IPR013087 -
Blo06g00421 465 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Blo06g00421 465 Gene3D Classic Zinc Finger 57 126 - -
Blo06g00421 465 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Blo06g00421 465 MobiDBLite consensus disorder prediction 35 62 - -
Blo06g00421 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 443 - -
Blo06g00421 465 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 9 443 - -
Blo06g00421 465 Gene3D Classic Zinc Finger 147 212 - -
Blo06g00421 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00421 Blo-Chr6:24350637 Blo10g00983 Blo-Chr10:29046214 6.77E-116 dispersed
Blo06g00421 Blo-Chr6:24350637 Blo05g00053 Blo-Chr5:512809 1.97E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12474 PF00096 zf-C2H2 0.0079 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00421 K25870 - pop:7476863 505.753