Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00424 ATGGATCTCCCAAGTGGTCTCCGTCCTGACGATGCCAGCCCTGACTGGATGAGTAAAGCGGACAACGCGTGGGAACTCACGTCGGCCACTCTCGTCGGCCTCCAAAGCGTCCCTGGCCTGGTGATTTTGTACGGCAGCATTGTGAAGAAGAAATGGGCCGTCAACTCCGCTTTCATGGCGCTCTACGCCTTCGCCGCCGTCCTCGTCTGCTGGGTCGGGTGGGCGTACCAGATGTCGTTCGGCAAAAAGTTCATCTACTTCATGGGTCGCCCTAATATCTCGATGGACCAGAGGTTTCTACTGGACCAAGCTTTCTCCGGGAAAATTCCGAACGCCACGATGATGTATTTTCAGTTCGTGTTTGCAGCCATCACTTTGATCTTGATCGCCGGGGCGCTGCTAGGGCGGATGAATTTCCACGCTTGGATGCTGTTTGTGCCGCTTTGGCTGACCTTCTCCTACACGATTGGGGCGTACAGCATCTGGTGTCCAGAGGGATGGCTTTCCCGATTGGGTCTGATTGATTACTCCGGTGGCTATGTTATCCACCTCTCTTCTGGAGTTGCTGGTTTCACTGCTGCCTTCTGGGTAGGGCCCCGGCTGGGGAAGGACAGGGAGAGATTTCCGCCCAACAACATTCTTCTTATGCTCGCCGGGGCCGGCCTGCTTTGGATGGGCTGGACTGGATTCAACGGTGGCGATCCTTTCGCCGCTAGCACTGATGCATCTCTAGCCGTCCTTAACACCCACGTGTGCGCTGCCACGAGCTTGCTGACGTGGCTTTTGCTTGATATGCTTTTCTTTGGAAAGCCATCTGTTATTGGGGCCACCCAGGGGATGATCACCGGCCTAGTGTGCATAACTCCTGCTGCAGGAGTGGTACAAGGATGGGCGGCGATTTTAATGGGAATGATGTCTGGATTAATCCCATGGTTCACAATGATGGTAATCCACAAGAAAATATGGATCCTCCGACAAGTGGACGACACAATGGCAGTCTTCCACACCCACGCCGTCGCCGGAAGTCTTGGCGGAATCCTCACAGGACTCTTCGCCGAGCCCAAACTCAACCGCCTCTTTTACTTAGTCGACGAATGGGAGCACTACATAGGTCTCTTCTACGGCTTCCACTCCGGCAAAGTCAAAGCAGGATTCAGACAGATCGGAATTCAGCTTCTGGGTATTGTTTTCGTGGTCTGTGTCAACGTTCTGACGACGAGCCTGATATGTTTAGCTGTGAAACAAATAGTTCCATTGAGGCTGACTGAAGAGGAACTGGAGATGGGGGATGAAGCCATTCATGGAGAGGAAGCTTACGCATTGTGGGGAGATGGAGAAAAGTATGAGAGTTTTAAGCATAATGCATCATATCGTATGGAAGAGTTTCCTGCAGTCATACATAATAATCCTCCTTAA 1416 52.4 MDLPSGLRPDDASPDWMSKADNAWELTSATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWAYQMSFGKKFIYFMGRPNISMDQRFLLDQAFSGKIPNATMMYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPEGWLSRLGLIDYSGGYVIHLSSGVAGFTAAFWVGPRLGKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPFAASTDASLAVLNTHVCAATSLLTWLLLDMLFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGLIPWFTMMVIHKKIWILRQVDDTMAVFHTHAVAGSLGGILTGLFAEPKLNRLFYLVDEWEHYIGLFYGFHSGKVKAGFRQIGIQLLGIVFVVCVNVLTTSLICLAVKQIVPLRLTEEELEMGDEAIHGEEAYALWGDGEKYESFKHNASYRMEEFPAVIHNNPP 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24638389 24640021 + BLOR17007 Blo06g00424 61717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00424 471 Pfam Ammonium Transporter Family 23 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Blo06g00424 471 PANTHER AMMONIUM TRANSPORTER 4 MEMBER 1-RELATED 1 465 - -
Blo06g00424 471 SUPERFAMILY Ammonium transporter 16 421 - -
Blo06g00424 471 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Blo06g00424 471 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005887
Blo06g00424 471 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005887
Blo06g00424 471 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005887
Blo06g00424 471 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005887
Blo06g00424 471 Gene3D Ammonium transporter AmtB like domains 8 457 IPR029020 -
Blo06g00424 471 PANTHER AMMONIUM TRANSPORTER MEP2 1 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
Blo06g00424 471 TIGRFAM amt: ammonium transporter 21 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00424 Blo-Chr6:24638389 Blo07g00139 Blo-Chr7:1877222 0 dispersed
Blo06g00424 Blo-Chr6:24638389 Blo02g00477 Blo-Chr2:6850474 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00424 K03320 - cit:112498327 793.497