Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00511 ATGGGCGTGTTTGATTCTGATCCGGCTTTGATTTCGAACACCACTGAATTGAAGAGGGAGTTTCAGAGATTGGTTACGGCTATTATTGATGACGACGATTACAGTGCGGAGGCTATCGATCCTGCGAAGGAGGCTTTGTGTGCTCTGGAGCGGTTGAAGCTCAGAAAGAGGTCGCTATCGTGTAACTCCGGGGAGGCTCTGTGCTGCCCTGAGGAGTTTCGGTGTCCACTTTCTAAGAACTTGATGAGGGATCCCGTCGTAGTGGCCTCCGGCCAGACTTTCGACAGACCCTTCATCCAGCAATGGTTAAAAGCAGGAAACCGGATTTGCCCTCGTACCCAACAAGTCCTCTCCCACACAATACTTGTTCCTAATCATTTGATTCGGGAAATGATATCTCAATGGTGTATCACTAGAGGAATTGAAATGTCTGAGCCGGTTAATTATCTTACCGATGAAGGGGTGGTAACAGATTCAGATCGAGATCATTTTCTTTGTCTGCTCGAGAAAATGTCTTCAACAATATCCGATAAAAAAGCAGCGGCCAAAGAACTGCGATTGTTGACAAAGAGAATATCCTCATTCCGGGTGCTTTTTGGGGAGTATGAAGATGCAATCGTATTGTTACTTAGTCCACTATCTGAAGGCAGGTCTCAAGAAAATTGCAATGCCGATCTCCAAGAAGATGTTATCACCACACTTTTAAATTTATCAATCCATGACAACAATAAGAAGCTTGTTGCTCAAACCCCTACTGTATTTCCTCTTCTTATAGAAGCATTGAGAACCGGAACCACAGAAACCCGGAGAAATGCAGCTGCAGCCCTCTTCACCTTGTCAGCTCTTGATTCAAACAAGTTGCTAATCGGAAAATCAGGTGCTTTGAAACCTCTTATTGAGCTTCTGGAAGAGGGTGATTCATTATCTGTGAAAGATGCCTCTTCGGCAATATTTAATTTATGTATCCTCCGCGAGAACAAGGCAAGGGCCGTAAGGGATGGAGCTGTCAGAGTTATATTGAAGAAGATCACCAACCGCCTGAATGTGGATGAGTTGTTGGCTATTCTTGCGATGCTTTCAACCCATCCACAGGCCGTTGAGGAAATGAAAGATCTTGGAGCTGTTTCTTGCTTGCTCAGCACTATGAGAGAGACTACTTGTGCGCGAAACAAGGAAAATTGTGTTGCAATCCTCTACGCCATCTGTTTTTATGACCGAACAAAGTGGAAGGAAATAAGGGATGAGGAAAATACTTATGGAACAATCTCGGAGCTAACTCAGAATGGAACATCGAGGGCCATGAGAAAGGCTGCTGGAATTCTCGAGAGACTGAACAGGGCTGTTAATATTACGCATACTGCATAG 1365 44.69 MGVFDSDPALISNTTELKREFQRLVTAIIDDDDYSAEAIDPAKEALCALERLKLRKRSLSCNSGEALCCPEEFRCPLSKNLMRDPVVVASGQTFDRPFIQQWLKAGNRICPRTQQVLSHTILVPNHLIREMISQWCITRGIEMSEPVNYLTDEGVVTDSDRDHFLCLLEKMSSTISDKKAAAKELRLLTKRISSFRVLFGEYEDAIVLLLSPLSEGRSQENCNADLQEDVITTLLNLSIHDNNKKLVAQTPTVFPLLIEALRTGTTETRRNAAAALFTLSALDSNKLLIGKSGALKPLIELLEEGDSLSVKDASSAIFNLCILRENKARAVRDGAVRVILKKITNRLNVDELLAILAMLSTHPQAVEEMKDLGAVSCLLSTMRETTCARNKENCVAILYAICFYDRTKWKEIRDEENTYGTISELTQNGTSRAMRKAAGILERLNRAVNITHTA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27208841 27210905 - BLOR17094 Blo06g00511 61804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00511 454 SMART arm_5 282 322 IPR000225 GO:0005515
Blo06g00511 454 SMART arm_5 240 281 IPR000225 GO:0005515
Blo06g00511 454 SMART arm_5 362 403 IPR000225 GO:0005515
Blo06g00511 454 SMART Ubox_2 72 135 IPR003613 GO:0004842|GO:0016567
Blo06g00511 454 Pfam Armadillo/beta-catenin-like repeat 285 321 IPR000225 GO:0005515
Blo06g00511 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 4 452 - -
Blo06g00511 454 CDD RING-Ubox_PUB 73 115 IPR045210 -
Blo06g00511 454 Gene3D - 203 348 IPR011989 -
Blo06g00511 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
Blo06g00511 454 ProSiteProfiles U-box domain profile. 68 142 IPR003613 GO:0004842|GO:0016567
Blo06g00511 454 Gene3D - 349 449 IPR011989 -
Blo06g00511 454 PANTHER U BOX DOMAIN-CONTAINING 4 452 - -
Blo06g00511 454 Pfam U-box domain 70 137 IPR003613 GO:0004842|GO:0016567
Blo06g00511 454 SUPERFAMILY ARM repeat 172 444 IPR016024 -
Blo06g00511 454 SUPERFAMILY RING/U-box 67 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00511 Blo-Chr6:27208841 Blo11g00425 Blo-Chr11:3699585 7.05E-96 dispersed
Blo10g00673 Blo-Chr10:21604615 Blo06g00511 Blo-Chr6:27208841 0 transposed
Blo05g00283 Blo-Chr5:3109281 Blo06g00511 Blo-Chr6:27208841 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00511 - - zju:107426793 649.047