Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00606 ATGGCTGACCCTTATTCCAATTTCTTCAGCGGCTGGTTCAACTTTACGTCTGTAGCTCCTCACTTTTCTTCCCTCACTTCTTACTACTCAGAACCCTCTTTCAATCTTTCTTCTCCTTTTCCCGGCTTGAACAAGGACGACGACGACATGTTAATTACCAGTACTGATACTACTAATTCATCCTTTCAATTTCAGCCCTTATTTTCTTCCTCACCTCCTTCTATACAAGCTCTTCCTTTGATAAACCAATTAAGCCCAGAAAATTACGTGAACTCAAGCAACGGAACAATGGACGAGAAAGAGAGGAGGGATTTGTGCAATGAAGAAGAAGATGATGAATCTTTTTCTGTAGCCCTAAGTATAGGCCTTCCTTGTTCTAATTTGGATTCAGAAACCAAAGAACTCATTTCGCTGCCATTTTCGTATTTGGGCGAGAAGGATGAAAGCCATTTGGTTTCGGATTACCCATTATATAGATTAAACAAGGGTCAGTATTGGATTCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAATTTTCATGTCCACTTTGCTCTAAGGCTTTTAACAGATACAATAATCTCCAGATGCATATGTGGGGACATGGATCACAGTACAGAAAAGGGCCAGACTCACTGAAAGGAATCCAACCAACAGCAATGTTGAAGCTCCCTTGCTACTGCTGCGCATCAGGCTGCAAATACAACATCGACCACTCTCAATCCAGGCCACTCAAAGATTTCAGAACCCTTCAAACCCATTACAAGAGAAAGCATGGGATTAAACCCTTCACTTGCAGAAAATGCAGTAAGCCTTTTGCTGTGAAAGGCGACTGGAGAACCCACGAGAAGAACTGTGGAAAATTTTGGTATTGCTTTTGTGGCTCCGATTTTAAGCACAAACGGTCGCTAAAAGATCACGTCAGGGCTTTCGGCCACGGCCATGGACCTGTCGGGCTTAATTTCTTTGAGGATGAGAATGATCCTGCATCTGAAGTGGAACATGATGGGAGGAAAATGTCTACAATGTCTGAAACAGAGGATGAGAATTTTATGCATTTTCGTAATGAGATGGCGAGATTTGAGGAAAAAATGCTTAGAGACATGGTACAACTACAAGAACAGGTTGCTCGAATTCTATGGCTGTTAGATAAGAAATTTGGCATCAGAAAAGAAGTAAAGAAGGCAGATAATATAGAGGTGATAGATGAAAGAGAACCAACTGCCGAGGAAATTGTTTGCAAAAAAATATATGAAGAATTGGCAATAAAAGAAATTTTCTTGGAGGAGAGGGACCGAGTAAGAGAAACAAAAAATTTTCAAGAGAAGATCGGTGGGGAAATAGTTACAGTGGATGCAAAGAATCTTGAAGATGATAAAATAACAGCAAATGCAGAATTAGAAGAGGCAGAAAGTCTTGTTTCTGAAAACGAGAAGGCGGTAGAAGAATTGGAGATAAAAAAAATTCGAGGGAGGAGGAAGCGGGTTTTTTGCGATTACAGGAAAGGAGCAGACAACAGTAGAAGGGGAGGAACCGGCTGCGGTAGAGATAGACGATCGAAATGGTGGAGCGCTCCGCCGACGGTGGAGATGGAGTAA 1599 41.84 MADPYSNFFSGWFNFTSVAPHFSSLTSYYSEPSFNLSSPFPGLNKDDDDMLITSTDTTNSSFQFQPLFSSSPPSIQALPLINQLSPENYVNSSNGTMDEKERRDLCNEEEDDESFSVALSIGLPCSNLDSETKELISLPFSYLGEKDESHLVSDYPLYRLNKGQYWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPDSLKGIQPTAMLKLPCYCCASGCKYNIDHSQSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKPFAVKGDWRTHEKNCGKFWYCFCGSDFKHKRSLKDHVRAFGHGHGPVGLNFFEDENDPASEVEHDGRKMSTMSETEDENFMHFRNEMARFEEKMLRDMVQLQEQVARILWLLDKKFGIRKEVKKADNIEVIDEREPTAEEIVCKKIYEELAIKEIFLEERDRVRETKNFQEKIGGEIVTVDAKNLEDDKITANAELEEAESLVSENEKAVEELEIKKIRGRRKRVFCDYRKGADNSRRGGTGCGRDRRSKWWSAPPTVEME 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28838206 28841496 + BLOR17189 Blo06g00606 61899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00606 532 SUPERFAMILY beta-beta-alpha zinc fingers 247 284 IPR036236 -
Blo06g00606 532 Gene3D Classic Zinc Finger 262 313 - -
Blo06g00606 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Blo06g00606 532 Coils Coil 453 487 - -
Blo06g00606 532 SMART c2h2final6 180 202 IPR013087 -
Blo06g00606 532 SMART c2h2final6 290 313 IPR013087 -
Blo06g00606 532 SMART c2h2final6 264 284 IPR013087 -
Blo06g00606 532 MobiDBLite consensus disorder prediction 502 532 - -
Blo06g00606 532 MobiDBLite consensus disorder prediction 502 516 - -
Blo06g00606 532 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Blo06g00606 532 Gene3D Classic Zinc Finger 179 202 - -
Blo06g00606 532 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 336 - -
Blo06g00606 532 PANTHER ZINC FINGER PROTEIN WIP2 1 336 IPR043584 GO:0003700|GO:0010468
Blo06g00606 532 SUPERFAMILY beta-beta-alpha zinc fingers 173 202 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo05g00203 Blo06g00606 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00606 Blo-Chr6:28838206 Blo11g00133 Blo-Chr11:1026571 8.35E-121 dispersed
Blo10g00478 Blo-Chr10:10187070 Blo06g00606 Blo-Chr6:28838206 8.98E-26 wgd
Blo05g00203 Blo-Chr5:2073554 Blo06g00606 Blo-Chr6:28838206 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12483 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00606 - - qsu:111986391 426.787