Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00622 ATGGAGCTGGGCTTGAGCTTGGGAGTTGCATCAAAGCCGTTTTCCTTCGCTGAAAAACCTCGACATCGAAGAGTTTCCGCAAAAGATTTAGGCTTTTGCATGGGTTTATCGATTGGATCGGCACCTGTAACTGGAGAGAAAGAAACAGCAGGGGAAGAAGAAGAAGAATATGAAAATGGGGAAGATAATCAATTATACAGAGAGGAGGAGGATTCTCGTCTAGTCTCCATTGATGGACCAGTTCAGCTCGACCTGCTTCCTCACACTCCTGCTCCTCGAATTCCTCCAACCGCTATCCAAGCCTTCCATTGGCCCCCATGTGAAGACGGGAGTTCTGAAGCTGGTTCTTCAGCCAGGGGGCTCGACGTGAATCGAATACCCTCAACGGACGCAGTGTACGGGGACGCATCGCCGCCGTACGATCCGGCGATTTCGCTACCGATGTACATCGGCGGAGGAGACGGCGCTGGAAATGAAATGAGAGAGGCGGATAGAGCCTCTTCCAGAACAAGCGATGAAGATGAGAATAGCTCTAGCAGGAAAAAACTGAGGCTTTCCAAAGAACAGTCTGCTTACTTAGAAGAAAGTTTCAAAGAACACAACACGTTAAACCCAAAGCAAAAGCTGGCCGTAGCGAAACAGCTCAATCTCCGACCTCGCCAAGTGGAAGTGTGGTTTCAAAATCGGAGAGCAAGGACGAAACTGAAGAAAACGGAGGTGGATTGCGAATACTTAAAGAAGTGCTGCGAGACACTGACGGTGGAAAACAGACGGCTGCAGAAAGAGTTGCAAGAGCTAAGAGCGTTGAAGAGAAACAACTCACTGTACATGCAATTACCGGCGACGACTCTAAACATGTGCCCCTCTTGCGAACGGGTAGCCACTTCTTCTACCGCTGCCGTCTCCTCCGCCGTAGCTTCAAAGACGTGCACGGAACCTATAATAAAGGCGTCATCTGGGCTATCTTTTAGCAAACCCAGTGGCAATGGACAGAGGTCGGAGCTCACCGCTCGGAGGCCGAAGCTGGCAGTGGCAGACGAACGGAGCTCGAAACTCGGAGCTCGGAGCTGGCACTGGCGACGGACAGAGGTTGGAGCTCACCGCTCGGAGCTAGCAGTGGCAGACGAATGGAGCTTGGAGCTGGCAGTGGCGACTTTCGACGGACGGACGGAGCTCGGAGCTAGCACCTGGCAGAGGCTGACGACGGAGCTCGCTGCACATTGGTCGGTGGTCGCTGGTCCGAGGCTGGAGGAGACTGGCCGGCAAGAGGGTGAGGTTTCTTCTAGTGTAGACGTTGTAATTCTCATGCCATTTGAGCTCGATCAATGTACAGGAACTGTTGAGAATCGAACGTGGACCGTAATAGGCACTTGGGAGGAGCTGCTCCTCGCCTCCGCCGTCGACCGCCACGGCTTCCACAACTGGGACTCCGTCGCCTTGGAGCTCCAGGCCCGCTCCTCTCTCCCTATCCTCCTCGCCACCGCCCGCAACTGCGAGCTTAAGTTTTGTGACCTCAAACGCCGTTTCAGTTCCGTTAGGAAAGACGGCGTCGTATCGGAGAGAGAGAACGGTACGGATTTCGGCGACGAGATCGATGGTTTCCCGTGGGTCGACGAGTTGAGGAAACTTCGAGTTGCTGAACTCAGAAGGCAGGTCCAACGTTCCGACGTTTCAATCCATTCGTTACAGTTGAAGGTAAAGAAACTAGAGGAGGAAAGAGACCGAAGCTTGAAGGAGAAGGAAATCAGTATAGGAAAACCAGATCTAGAGGAGAATTCTGGAGAACGGAGATCAGAAAACGACAACGAATTTTCACAAAAATCAGACCGGTCCGAACCGGAGAGGACGACCGTGAAGGTCTTGGTCTCCGGCGAAGAATCCGACAGATTGTATCATTCTGTCAACGAGTCTAATTCCACCGGTTCCAAAAGCGGCGATGCTAAAACTGGTGAAGAAAACACACAATCGGAAACCAAACCGGGTTTATTTTATTCAGACAGATCCGAACCGCTTCAGCGAGACTCCAAGCCTGTTACGGCAGACTCGGACAACGCAAGCTCCGATACTGTAGCTAAAAATCCGGCATGCGAGCCGCTGGAACCGAGTCTGGAAAAGAAAGTGCAGGAGTCGTCCGAGTTAGATGACTCCCGGCCTCGGTCAAATGGAAAAGAGGTAGAAACGAGAGAGAGCAGTGAGGTTCAAAGCTCAGCCAGTTTGGCGGGTAAGAGGAAAAGGAAGAAACGTCAGAGAAGGGAAATCACGAGCGGTACCATCGGGGAGCAAGCGCCGCCGCATGCGAAAGGGTCATCAGAGCAGTTGAACGAAATTTTACGAATAATCCAAGCGCACCACCACAGTCCGTCGTTCGAGTCTCGGCTGCAGAGCCAGGAAATGGATTCAGAGGAGTACAAGAATATTGTCCGGCGGCATATAGACTTGGAGACAATACGAGGAAAACTCCACAAGGGTTCTTATGCGTTGTTGCCCCTCGCATTTTACCGAGATCTCCTCCTCCTTTTCACCAATGCCGTTATCTTCTTCCCCAAATCCTCCGACGAGTCAATTGCTGCCGGTGAGCTTCTTCAACTTGTCTCCACGGCAATGAAGAAGATTCAGGTCCTCCCTACGCCGCATCCTTCTCCAGATTCTTCGCCTCCAATTCCGTTACCATCTCAAGTCCCTGAGCTTGAGAGGTGGGATTCTGTACCAATTGTAGTTTGTCGAAAACGCAGCTCGATTGCGGCAAAGCCTTCCTCGCTGGTTACAGTTGGTAATAAAGGGGAAGAGTATCATAATGATGAAAAGAAGCCATCTTTTGATCTGAAGCTGCCTGTAAAATCCGCGTCAACTGTAGTTGAGGAGTCAGGATCAATAAAGGAAAACAAAGTCGGAGAGAAGCCTGTCACTGGAGCCAGAAGCTCGAGAAGAAGCCACGATGGCGTCAGTAACGTCAGTGCGCCACCCAGTGGGAAGAAGCAACACGCGAGTGGTCTGAAAGCAGGTTCAGTTGATAAGTTAGAAAATCCAAAAACAGAAAAGAAAAACCCAGAGACAGTGCCGGTGGATAAAAGGCGGAGTGCTGCAGATTTCCTGAAAAGAATCAAGCAGAATACTCCATCAGAAACTATAAACACTGGAAGAGAACAGAAGAAGGGTGGGGCGAAGGGAGAGAAGGTCAAAGAAAGATCGTTGCGACAAAGCAGGGAAAAGAAACAAGCTAAGCAGAATAACAGCCCATCAAAACGAACTGTCGGACGGCCGCCTAAAAAGGAGGCGGAGAAGAGCAGTGGCTCAACTAAACGAACACGGGAATTTGGCGGCAAGGATCCCCACAAAAGCCCAAGAAAAAGGTCTAAAAGGTAA 3363 51.09 MELGLSLGVASKPFSFAEKPRHRRVSAKDLGFCMGLSIGSAPVTGEKETAGEEEEEYENGEDNQLYREEEDSRLVSIDGPVQLDLLPHTPAPRIPPTAIQAFHWPPCEDGSSEAGSSARGLDVNRIPSTDAVYGDASPPYDPAISLPMYIGGGDGAGNEMREADRASSRTSDEDENSSSRKKLRLSKEQSAYLEESFKEHNTLNPKQKLAVAKQLNLRPRQVEVWFQNRRARTKLKKTEVDCEYLKKCCETLTVENRRLQKELQELRALKRNNSLYMQLPATTLNMCPSCERVATSSTAAVSSAVASKTCTEPIIKASSGLSFSKPSGNGQRSELTARRPKLAVADERSSKLGARSWHWRRTEVGAHRSELAVADEWSLELAVATFDGRTELGASTWQRLTTELAAHWSVVAGPRLEETGRQEGEVSSSVDVVILMPFELDQCTGTVENRTWTVIGTWEELLLASAVDRHGFHNWDSVALELQARSSLPILLATARNCELKFCDLKRRFSSVRKDGVVSERENGTDFGDEIDGFPWVDELRKLRVAELRRQVQRSDVSIHSLQLKVKKLEEERDRSLKEKEISIGKPDLEENSGERRSENDNEFSQKSDRSEPERTTVKVLVSGEESDRLYHSVNESNSTGSKSGDAKTGEENTQSETKPGLFYSDRSEPLQRDSKPVTADSDNASSDTVAKNPACEPLEPSLEKKVQESSELDDSRPRSNGKEVETRESSEVQSSASLAGKRKRKKRQRREITSGTIGEQAPPHAKGSSEQLNEILRIIQAHHHSPSFESRLQSQEMDSEEYKNIVRRHIDLETIRGKLHKGSYALLPLAFYRDLLLLFTNAVIFFPKSSDESIAAGELLQLVSTAMKKIQVLPTPHPSPDSSPPIPLPSQVPELERWDSVPIVVCRKRSSIAAKPSSLVTVGNKGEEYHNDEKKPSFDLKLPVKSASTVVEESGSIKENKVGEKPVTGARSSRRSHDGVSNVSAPPSGKKQHASGLKAGSVDKLENPKTEKKNPETVPVDKRRSAADFLKRIKQNTPSETINTGREQKKGGAKGEKVKERSLRQSREKKQAKQNNSPSKRTVGRPPKKEAEKSSGSTKRTREFGGKDPHKSPRKRSKR 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29128151 29138029 - BLOR17205 Blo06g00622 61915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00622 1120 MobiDBLite consensus disorder prediction 576 770 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 1005 1031 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 576 632 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 151 186 - -
Blo06g00622 1120 SMART bromo_6 762 873 IPR001487 GO:0005515
Blo06g00622 1120 PANTHER BNAC04G22430D PROTEIN 446 1120 - -
Blo06g00622 1120 Coils Coil 552 579 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 633 662 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 1084 1111 - -
Blo06g00622 1120 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 446 1120 - -
Blo06g00622 1120 Gene3D - 184 234 - -
Blo06g00622 1120 SUPERFAMILY Bromodomain 771 871 IPR036427 GO:0005515
Blo06g00622 1120 CDD Bromodomain 771 868 - -
Blo06g00622 1120 SMART halz 236 279 IPR003106 GO:0006355|GO:0043565
Blo06g00622 1120 MobiDBLite consensus disorder prediction 1033 1047 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 958 973 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 702 730 - -
Blo06g00622 1120 Pfam Bromodomain 775 855 IPR001487 GO:0005515
Blo06g00622 1120 SUPERFAMILY Homeodomain-like 172 237 IPR009057 -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 975 990 - -
Blo06g00622 1120 Pfam Homeodomain 180 234 IPR001356 GO:0003677
Blo06g00622 1120 ProSiteProfiles 'Homeobox' domain profile. 176 236 IPR001356 GO:0003677
Blo06g00622 1120 Pfam Homeobox associated leucine zipper 236 270 IPR003106 GO:0006355|GO:0043565
Blo06g00622 1120 MobiDBLite consensus disorder prediction 677 691 - -
Blo06g00622 1120 ProSiteProfiles Bromodomain profile. 781 854 IPR001487 GO:0005515
Blo06g00622 1120 MobiDBLite consensus disorder prediction 49 64 - -
Blo06g00622 1120 SMART HOX_1 178 240 IPR001356 GO:0003677
Blo06g00622 1120 MobiDBLite consensus disorder prediction 158 186 - -
Blo06g00622 1120 CDD homeodomain 180 237 IPR001356 GO:0003677
Blo06g00622 1120 Coils Coil 249 272 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 41 64 - -
Blo06g00622 1120 Gene3D - 733 874 IPR036427 GO:0005515
Blo06g00622 1120 ProSitePatterns 'Homeobox' domain signature. 211 234 IPR017970 GO:0000981|GO:0006355
Blo06g00622 1120 MobiDBLite consensus disorder prediction 950 1120 - -
Blo06g00622 1120 MobiDBLite consensus disorder prediction 1048 1076 - -
Blo06g00622 1120 CDD SANT 451 506 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01103 Blo-Chr4:17324118 Blo06g00622 Blo-Chr6:29128151 1.80E-60 dispersed
Blo06g00035 Blo-Chr6:723435 Blo06g00622 Blo-Chr6:29128151 6.52E-61 dispersed
Blo06g00378 Blo-Chr6:22337729 Blo06g00622 Blo-Chr6:29128151 1.56E-07 dispersed
Blo06g00622 Blo-Chr6:29128151 Blo07g01279 Blo-Chr7:32988904 7.60E-78 dispersed
Blo12g01131 Blo-Chr12:28940742 Blo06g00622 Blo-Chr6:29128151 8.39E-12 dispersed
Blo14g00372 Blo-Chr14:4027290 Blo06g00622 Blo-Chr6:29128151 4.48E-12 dispersed
Blo03g00148 Blo-Chr3:4015074 Blo06g00622 Blo-Chr6:29128151 6.27E-63 transposed
Blo12g00684 Blo-Chr12:25084228 Blo06g00622 Blo-Chr6:29128151 5.88E-32 transposed
Blo14g00693 Blo-Chr14:15928520 Blo06g00622 Blo-Chr6:29128151 5.25E-38 transposed
Blo10g00131 Blo-Chr10:1488461 Blo06g00622 Blo-Chr6:29128151 6.17E-46 wgd
Blo05g00182 Blo-Chr5:1733002 Blo06g00622 Blo-Chr6:29128151 2.05E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12486 PF00439 Bromodomain 1.90E-08 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00622 - - csv:101208443 613.224