Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00638 ATGGGGAAGATATCGCAGCAGAATCAGAACAACTCCGTCACTGTTAACTGTGGTAACAAGGAGAAGGTGAAGAAGAGGACTCGTAAAAGTGTTCCTCGCGACGCTCCTCTGCAGCGGAGCTCCGTGTATCGCGGAGTTACCAGACATCGATGGACGGGGAGATACGAGGCTCATCTGTGGGATAAGAACTGCTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGGTGCATATGACGATGAAGAGGCAGCAGCTCATGCTTATGATTTGGCAGCTTTAAAGTACTGGGGACAGGAAACCATTCTTAATTTTCCAGTAGAAACGTACGAGGAGGAGCTCAGCCAAATGGATGGCCAATCCAAAGAAGAATACATTGGATCATTGAGAAGGAAAAGTAGTGGGTTCTCTCGAGGAGTCTCGAAATACAGAGGGGTAGCGAGACATCATCACAACGGTAGATGGGAAGCCCGGATTGGCCGAGTATTTGGCAATAAGTATCTCTACCTTGGAACTTATGCTACCCAAGAAGAAGCTGCAACGGCTTACGATATGGCGGCAATAGAGTATCGCGGTCTTAACGCCGTTACGAACTTTGACCTCAGCCGTTACATCAAATGGCTTCGTCCGAATGCTGACGGTGAAAGCAACCACCCTAACGTCCCTATTAAATCTAACGACGTTATCCAGCCTGACGAGTGTGCCGGCGTTGATCCGGTTCCTACTCCTACCTTTCAGCTCGGATTCACCTTTTTACCTCATAACCGGCAGTGCTCTGATGACGGAGAAACTGACACCCACTCGCTACCGCCGCTATCCGGCGTGTCCGCCTCTGCGTCTTCAGCCCTAGGTCTTCTATTGCAGTCGTCGAAGTTTAAAGAAATGATGGAGAGAACGTCGGCCTCTGAGTGTCCGCCGGAACGGATGGAATCGACCGACCCTCCTCGAAGCAGCTTTCCCGACGATATTCAGACGTATTTTGACTGCCAAGACTCCAGTAACTACACGGACGGAGACGATAGTATTTTCGCTGATCTGAATTCTTTCGCATCGCCGATCTTTCATTGCGAGCTCGACGGTTAG 1080 49.91 MGKISQQNQNNSVTVNCGNKEKVKKRTRKSVPRDAPLQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPVETYEEELSQMDGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPNADGESNHPNVPIKSNDVIQPDECAGVDPVPTPTFQLGFTFLPHNRQCSDDGETDTHSLPPLSGVSASASSALGLLLQSSKFKEMMERTSASECPPERMESTDPPRSSFPDDIQTYFDCQDSSNYTDGDDSIFADLNSFASPIFHCELDG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29389774 29392145 + BLOR17221 Blo06g00638 61931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00638 359 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Blo06g00638 359 MobiDBLite consensus disorder prediction 296 318 - -
Blo06g00638 359 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 SUPERFAMILY DNA-binding domain 41 107 IPR016177 GO:0003677
Blo06g00638 359 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 Pfam AP2 domain 41 97 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 345 - -
Blo06g00638 359 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Blo06g00638 359 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700|GO:0006355
Blo06g00638 359 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 345 - -
Blo06g00638 359 SMART rav1_2 42 111 IPR001471 GO:0003700|GO:0006355
Blo06g00638 359 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00638 Blo-Chr6:29389774 Blo14g00610 Blo-Chr14:10677634 3.78E-123 dispersed
Blo06g00638 Blo-Chr6:29389774 Blo01g00418 Blo-Chr1:4714030 6.48E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12487 PF00847 AP2 1.80E-09 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00638 K09285 - pop:18097139 482.256