Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00675 ATGATTGTCATCAGACAGAGACAGAGTGAGGATGCATTATCAAGTTCATTTTATGATGATCGACTGGTGGGAATTCCGCATCATGATGGTAGACCATCAAATAGCCCACAAGCAGCTACATATTCAATTCCTTCAACCGCAAGCCAATTGAACTTTAGAAACTCCCTTAGGAGAGGCGATCTTTATGGTCCACCCGAAAGAAATCCCTTAAATTCTGGGCTGTGGATTTCTATTGAGCTTGTTGTCACTGTGGGACAGATTATTGCGTCTATTGTCATTTTATCTCTGTCAAAAAATGAGAAACCACAGGCTCCATTGTTTGCATGGGTTCTGGGTTATGCAACTGGTTGTGTGGCGACTATCCCTGTTCTTTTTTGGCGTTATCGTAATCGTCTCCAAGATGATGAGCAGCATTCCTCTCAATTGTATCTAGGCTCTTTCCAAAGTGACTCTCCCGAACCTTCATCTTATACAGCTATTTCCATTGGTCAAATGGCAGATGAGGAAATTGATCAAAGCACTGAACCTGCTCCAAGAAACCCAGAAATAAGAACCTTATGCACACAGCTTAATGCATTAATGGACCATTTTAAGATCGCATTGGATGGCTTCTTTGCCGTGTGGTTTGTTGTGGGTAATGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGAAGCTCCTAATCTATATAGGCTATCTTTAGTGTTCCTTACCTTCAGCTGTATTGGATATGCAATGCCATTTGTTATATGTGCTACAATCTGTTGCTGCATGCCTTGCATAATATCCATCCTGGGTATTCGAGATGATCGATTGGAAATTAATGGGGCAACATCGGAATCTATCAATGCTCTTCCTACATATAAGTTCATTTTACAGAAGAATAAGTGTGTCAATGATCATGAAATAAGCACAGTGCCATGTGAAGGTGGAGTTTTGGCTTCAGGTACCAAAAAGGGACGAGTAATATCGGGTGAAGATGCGGTCTGCTGTATTTGCTTAACAGAATATGCAGACAATGATGAACTGAGAGAACTCCCCTGCTTCCATGTCTTTCACATTGGATGCATTGATAAATGGTTAAAGATGAATGCATTATGTCCTCTCTGTAAAAGCTACATTGGTCAGAGCAGTCGCGCATAG 1143 41.38 MIVIRQRQSEDALSSSFYDDRLVGIPHHDGRPSNSPQAATYSIPSTASQLNFRNSLRRGDLYGPPERNPLNSGLWISIELVVTVGQIIASIVILSLSKNEKPQAPLFAWVLGYATGCVATIPVLFWRYRNRLQDDEQHSSQLYLGSFQSDSPEPSSYTAISIGQMADEEIDQSTEPAPRNPEIRTLCTQLNALMDHFKIALDGFFAVWFVVGNVWIFGGHSSPSEAPNLYRLSLVFLTFSCIGYAMPFVICATICCCMPCIISILGIRDDRLEINGATSESINALPTYKFILQKNKCVNDHEISTVPCEGGVLASGTKKGRVISGEDAVCCICLTEYADNDELRELPCFHVFHIGCIDKWLKMNALCPLCKSYIGQSSRA 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29871000 29872967 + BLOR17258 Blo06g00675 61968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00675 380 Pfam Ring finger domain 330 371 IPR001841 -
Blo06g00675 380 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Blo06g00675 380 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 25 376 - -
Blo06g00675 380 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 25 376 - -
Blo06g00675 380 CDD RING-H2_RNF111_like 329 371 - -
Blo06g00675 380 SMART ring_2 330 370 IPR001841 -
Blo06g00675 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 378 IPR013083 -
Blo06g00675 380 SUPERFAMILY RING/U-box 324 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00497 Blo-Chr3:18086362 Blo06g00675 Blo-Chr6:29871000 1.04E-48 dispersed
Blo06g00675 Blo-Chr6:29871000 Blo17g00036 Blo-Chr17:205414 1.11E-89 dispersed
Blo06g00675 Blo-Chr6:29871000 Blo18g00046 Blo-Chr18:306739 7.09E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00675 - - jre:109009152 498.049