Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00696 ATGTCGCTTCAAGCAGAAGTCCGATTCGTCTCCTTCGTCACCGGTCGTGCGTCGGATTCCAGCTTCGGCGTCGCTTGTCGCCTGTTGCCTTCACAGAGAGTTGTGAGGACTTCAGCTTCGATTCTTCGCAGAGAAGCAGGTCGTGCGTCGGATTCCAGCTTCGGACAAGGCTTGAAGCAAGAGGCCTACTCGTCGTCGGTCGTGCGTCGGATTCCAGCTTCGGCGTCGCCTATTGCATGTCGCCTTCGCAGAGAGTTATCTTGTCAATTTCTTGTACCGTTCTGTTCTTCGCAAACTCATCGGCAGGTACACAATCATAAACTCCAGCCATTTCTCGCTTCATCATATCAATCATTTCCATCCTACTTTGCCTCTGCCCTCCAATCTTGTATTGCCAAAAAGGCGATAGAGCCTGGAAAACAGCTCCATGCCCAATTATGCCAAAGGGGTCTTGGATTTAAGCCGTATATAGCTACAAAACTGGTGAATCTCTATAGCGTCTGCGACTCTCTATTAAACGCCCACCTCCTGTTTGATAGAATTCCCCAAAAGCACAATTTATTTCTTTGGAATGTTTTAATTCGTGGGTATGCATGGAATGGCCCGTATGAGGTTGCAATCTCTTTATACTACCAGTTGCTAGATCGTGGGCTCGTACCGAATAATTTTACGTTCCCATTTGTGCTCAAGGCTTGTGCTGCTCTCTCTGCGTTTGAAGACGGGAAAAATGTTCATGAGCAAGTGATACAGACTGGGTGTGAAGCTGATGTATTTGTCGGTGCGGCTTTGATCGACATGTACGCCAAATGTGGCTGTGTGGAGAAAGCTAAACAAGTTTTTGAGAAAGTCGAAAGGAGAGATGCTGTCTTATGGAATTCTATGCTTGCGGCTTATTCCCACAATGGAAAGCCAAATGATTCGATTGGTCTATGCAAAGATATGGCATTGGCTGGCGTACGACCCACAGAGGCTACTCTAGTAACCGTGATATCAGCGGCGGCGGACTCTGCAGCTTTTCCGCAAGGGAAGGAGCTTCATGGCTGCAGCTGGCGACATGCGTTCAGCTCAAACGACAAGGTGAAGACGGCGTTGGTAGATATGTATGCCAAGTGTGGGTCTGTTAAGATGGCTAAGAATTTATTCGAGGGGCTAGAAGAAAAGAGAGTTGTCTCTTGGAATGCTATGATTACTGGTTATGCAATGCATGGCCATGGTTATGAAGCACTTGGTTTGTTTGAGGAGATGAGAAAACAAGTTCAGCCTGATCGCATAACTTTCGTGGGTGTTTTAGCAGCTTGCAGCCATGGAGGTTTTCTCAGAGAAGGGAGGAAGTTTTTCGAGTCCATGATGAGAGATTACGACATAGATCCTACAGTTCAGCACTACACATGCATGGTCGATCTACTTGGCCGTTGTGGTCAATTAGATGAAGCTTATAATCTCATAACCCAAATGAGAATATCTCCAGATTCTGGAGTGTGGGGGGCGCTGCTTAATTCCTGCAAATTCCATGGCCATTTGGAGTTGGGAGAGTTGGCATTGGAGAAGCTGATGGAGCTTGAACCAGACGATGGAGGAAATTACGTAATTCTATCAAACATGTACGCTCAAGCCGGGAAGTGGGAAGGAGTTGCAAGGCTGAGAAACCTAATGACAGACATGAGAATCAAGAAAAGCATCGCCTGCAGCTGGATCGAAGTGGAAAACAAACGCCATGCTTTTCTCTGCGAAGATACTTCCCATCCTGATTCCAACTTGATCTACGCAGAGTTAAAGAGGATAGGAAAACTAATGAAAGAATTTGGTTATATCCCACAAACTGAATCAGTTTTCCACGACGTCGAAGATGATGAGAAGGCTAATATGGTATGTGGTCACAGTGAGAGGCTGGCAATTGCTTTTGGTCTCATCAGCACACCAGAAGGAACCCGGCTTTTGATAACCAAGAATCTACGAGTCTGTGAGGACTGCCATGTGGCGATCAAGTTCATCTCTAAAATCACAAAGCGGGAAATAACAATCAGAGACGTTAATCGTTACCATCACTTCGTTGATGGAAGAACAAAGATGAGAAGCAGATACAATTTAGTGGAAGCTCCATATTCTGATATCATCTCTCATCTCTTCTGCCCTTGTTGTTCTCTCTGTCAAGAGTTCAGAGAGCTGAAAATCAGAGGACTTGACCCTGCCTTAGGGTGGAATGGGATTCTTGCTCAGAGACAGAGAGGACCGTCTGGAGCATTGCAGTCTAGTACCTTCATGGAGGTTGTTAAATCAGCTGCTAGACATGGGTCTGCCTCTCGTGAAAAAGTAGCAATTAGAGCTGACCAGCAGAGTTACAGTTACACTCAACTCATATCATCAGCTCTCAATATTTCTCATCTGCTTTGTGGCAAGGATTTGAAAACCGTGAGCGGATTGGAAGCAGCTGTGCCTGTTGATGGAGGAAAGGGTCTTGGTGGAGCTAAAATTGGAATTGTGGCAAAACCTTCGGCTGAATTTGTGGCCGGAGTACTAGCAACTTGGTTCAGTGGAGGTGTAGCTGTTCCCCTTGCACTTAGCTACCCGGAAGCTGAGCTTTTACATGTGTTAAATGATGCAGAAGTCTCCATGATACTGAGCACTGAAGATCACAGCGAACTTATGCAAGGTGTTTCTGCAAAAACAGCTGCACAATTTTCGCTCATTCCTGTTGTTCCCAGTCTTTCTGTACATAAAAATACGCATAATGGCTCAAGTGAATTACTTGAGGAGTCCATAGAGATTTCAAGTGAGGATCCAGCACTAATAATTTACACTAGCGGTACGACAGGTAAACCTAAAGGAGTTGTTCATACCCACAGAAGCATCAATGCACAGGTTGAGTTTATGCCAAAATTTAGCGTGAGAGGTATCTGGCAGAGATGGCGTGACTCATATCCGACCGATGGAACTAAATCTGATGATGCTATCACTGTCTTTACCGGCGTTCCAACCATGTATGCTCGATTGATACAAGGTTATGATGCTATGGATTCGGAGCTACAAGCAACTTCAGCATCTGCTGCAAAAGAGTTGCGACTAATGATGTGTGGCTCTTCTGCACTTCCTGCGCCTGTTATGCATAAGTGGAAAGCCATAACTGGACATACCCTCTTGGAACGATACGGCATGACTGAATTCGTCATGTCAATATCAAATCCCCTAAAAGGTGAGAGAAAAGTCGGGACTGTCGGCAAACCCTTTCCCGGTGTAGAGGTTAAAATTGTCGCTGAAGATGGAAGTACCGCAAACGAGGGTGAACTTTGCGTTAGAAGCGCTTCGATGTTTAAGGAATATTGGAAGCTTCCGGAGGTAACAGAGGAGTCATTTATTGAAGGAGGGTTCTTCAAGACTGGAGACTCTGGTAGGCTGGATGAAGACGGCTATTACGTCATATTGGGAAGAACCAGTGCTGATATCATGAAAGTTGGAGGATACAAACTATCGGCATTAGAGATTGAGTCCGTCATTTTACAGGCAAGAGACATAAGCAAGAAAAAGTGTTGTGTTTTGGGCTTACCTGACAAAGATTATGGAGAATGTGTTTGTGCAATCATTGTGGCAGAGGAAAACACAAAGAAGAAGAGGGAAGAAGAGTTAAAGCCAGCTATAAGCTTGGAGGAACTCTGCAACTGGGCTAAGGACAAACTAGCCCCTTACAAGGTGAATAAAAAGGAGTTGAAGAAAACAGTGGCGCAGGACAATGGGGCTCGTAATACTTAG 3744 45.43 MSLQAEVRFVSFVTGRASDSSFGVACRLLPSQRVVRTSASILRREAGRASDSSFGQGLKQEAYSSSVVRRIPASASPIACRLRRELSCQFLVPFCSSQTHRQVHNHKLQPFLASSYQSFPSYFASALQSCIAKKAIEPGKQLHAQLCQRGLGFKPYIATKLVNLYSVCDSLLNAHLLFDRIPQKHNLFLWNVLIRGYAWNGPYEVAISLYYQLLDRGLVPNNFTFPFVLKACAALSAFEDGKNVHEQVIQTGCEADVFVGAALIDMYAKCGCVEKAKQVFEKVERRDAVLWNSMLAAYSHNGKPNDSIGLCKDMALAGVRPTEATLVTVISAAADSAAFPQGKELHGCSWRHAFSSNDKVKTALVDMYAKCGSVKMAKNLFEGLEEKRVVSWNAMITGYAMHGHGYEALGLFEEMRKQVQPDRITFVGVLAACSHGGFLREGRKFFESMMRDYDIDPTVQHYTCMVDLLGRCGQLDEAYNLITQMRISPDSGVWGALLNSCKFHGHLELGELALEKLMELEPDDGGNYVILSNMYAQAGKWEGVARLRNLMTDMRIKKSIACSWIEVENKRHAFLCEDTSHPDSNLIYAELKRIGKLMKEFGYIPQTESVFHDVEDDEKANMVCGHSERLAIAFGLISTPEGTRLLITKNLRVCEDCHVAIKFISKITKREITIRDVNRYHHFVDGRTKMRSRYNLVEAPYSDIISHLFCPCCSLCQEFRELKIRGLDPALGWNGILAQRQRGPSGALQSSTFMEVVKSAARHGSASREKVAIRADQQSYSYTQLISSALNISHLLCGKDLKTVSGLEAAVPVDGGKGLGGAKIGIVAKPSAEFVAGVLATWFSGGVAVPLALSYPEAELLHVLNDAEVSMILSTEDHSELMQGVSAKTAAQFSLIPVVPSLSVHKNTHNGSSELLEESIEISSEDPALIIYTSGTTGKPKGVVHTHRSINAQVEFMPKFSVRGIWQRWRDSYPTDGTKSDDAITVFTGVPTMYARLIQGYDAMDSELQATSASAAKELRLMMCGSSALPAPVMHKWKAITGHTLLERYGMTEFVMSISNPLKGERKVGTVGKPFPGVEVKIVAEDGSTANEGELCVRSASMFKEYWKLPEVTEESFIEGGFFKTGDSGRLDEDGYYVILGRTSADIMKVGGYKLSALEIESVILQARDISKKKCCVLGLPDKDYGECVCAIIVAEENTKKKREEELKPAISLEELCNWAKDKLAPYKVNKKELKKTVAQDNGARNT 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30074061 30085668 + BLOR17279 Blo06g00696 61989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00696 1247 Pfam AMP-binding enzyme 983 1149 IPR000873 -
Blo06g00696 1247 Pfam AMP-binding enzyme 821 958 IPR000873 -
Blo06g00696 1247 Pfam AMP-binding enzyme C-terminal domain 1159 1232 IPR025110 -
Blo06g00696 1247 Pfam PPR repeat family 186 233 IPR002885 -
Blo06g00696 1247 Pfam PPR repeat family 389 433 IPR002885 -
Blo06g00696 1247 Gene3D - 738 954 IPR042099 -
Blo06g00696 1247 SUPERFAMILY Acetyl-CoA synthetase-like 759 1236 - -
Blo06g00696 1247 Gene3D Tetratricopeptide repeat domain 341 579 IPR011990 GO:0005515
Blo06g00696 1247 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Blo06g00696 1247 Gene3D - 1145 1235 IPR045851 -
Blo06g00696 1247 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Blo06g00696 1247 ProSitePatterns Putative AMP-binding domain signature. 930 941 IPR020845 -
Blo06g00696 1247 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 681 723 IPR006461 -
Blo06g00696 1247 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 418 IPR002885 -
Blo06g00696 1247 Gene3D - 955 1142 IPR042099 -
Blo06g00696 1247 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 99 688 - -
Blo06g00696 1247 CDD MCS 769 1236 - -
Blo06g00696 1247 PANTHER - 99 688 - -
Blo06g00696 1247 Pfam PPR repeat 262 286 IPR002885 -
Blo06g00696 1247 Pfam PPR repeat 462 486 IPR002885 -
Blo06g00696 1247 Pfam PPR repeat 362 388 IPR002885 -
Blo06g00696 1247 Pfam PPR repeat 289 318 IPR002885 -
Blo06g00696 1247 Gene3D Tetratricopeptide repeat domain 238 340 IPR011990 GO:0005515
Blo06g00696 1247 Gene3D Tetratricopeptide repeat domain 95 237 IPR011990 GO:0005515
Blo06g00696 1247 Pfam E motif 504 566 IPR046848 -
Blo06g00696 1247 Pfam PLAC8 family 684 721 IPR006461 -
Blo06g00696 1247 Pfam DYW family of nucleic acid deaminases 602 688 IPR032867 GO:0008270
Blo06g00696 1247 TIGRFAM PPR: pentatricopeptide repeat domain 390 418 IPR002885 -
Blo06g00696 1247 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Blo06g00696 1247 TIGRFAM PPR: pentatricopeptide repeat domain 189 221 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo06g00696 Blo10g00493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00696 Blo-Chr6:30074061 Blo07g00268 Blo-Chr7:3202439 5.87E-50 dispersed
Blo12g00657 Blo-Chr12:24903375 Blo06g00696 Blo-Chr6:30074061 2.98E-09 dispersed
Blo14g00495 Blo-Chr14:6590052 Blo06g00696 Blo-Chr6:30074061 7.10E-14 dispersed
Blo06g00695 Blo-Chr6:30069693 Blo06g00696 Blo-Chr6:30074061 3.94E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00696 - - jre:109019203 918.302