Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00765 ATGATGTTTCATCCTCAAGGAGCTGTCAGACGCACTTGTCGACTCCTTGCAGTCACCAGTGAAGATTTAGTTGAACCTAAACGGAAAAAGGATAATGGTGAGGAGCATCTAAGATATCCCTTTCCAGAGCTACAATCTTCAGGGCGTTTAGAGGTCCGGAGTTTGGCTAGCCCAAGCAGAGCAGAATTCAGCAAAGTTGTTGAATCATATCAACCAAATTTAATTTACTTGAGAGGGGCGCTACTCGAGAATGATGAAATAGGATCTTTGTCGTGGGGAGGTGTTGATTTGTCCACTGTTGGATTAATACATGATCTCTTTGGCACTCCATTGCCAACCACTGTTTATCTTGAAATCCCGAATGGAGAGGAATTGGCAAAGGCACTTCACTCAAAGGGTATCCCGTATGTGATATATTGGAAGAACGCATTTTCCCGTTACGCAGCTACCCATTTCTGTAATGCATTGCTTTCTGTTTTGCAGAGCTCATCGGCTCATGCGTGGGACGTGTTTCAACTTGCACAAGCGTCCTTTCGGCTTTACTGCTCTCAAAACAATGATCTCCATCTGAGGAACGAACATGAAGTCAGTGATGATTTTTGCCCACAACTTCTCGGGGAGCGCTTACAAATTAATATTGAACCTTCAGAGTCAGATATGGCCAAAGACGAAGAAGATTCTTTGGGAACTCTCCCGACCGTAAATATATACGCAGAGGATGTGAGCATGAAGTTTCTTGTTTGTGGAGAACTAAGCAAGTTGGATGCATACTTACTCGGAGCTTTTGAGGATGGACTTAACGCTCTTTTGAACATCGAAATTCGTGGTAGCAAATTGCATGGCAAGTTCAGTGCTCCTCCACCGCCTCTTCAGGCAGAAGTATTTGCTCCCGGAGTTGTGACAATGCGATGCGACATATCGACCAGCACTTATGCTCATATCGCACTTTTGTTATCGGGTAGTGCACAAACTTGTTTTGACGATCAGCTTTTGGAAAATCATATAAAAAGGGAAATTATTGAAAACAGCCAACCAGTTCATGCTTTAACTGACGGTGAGGAGAGCAAAGTTGCATTATCGGAGCCTCGGAAATCTGCATCTGTTGCTTGTGGGGCAGCAGTATTCGAAGTTGGTATGAAGGTCCCTAACTGGGCTTCGCAGATTTTGAGGCAGCTAGCACCGGATATCTCCTATCGTAGCTTAGTAGCACTGGGTATTGCCTGCATACAAGGAGTACCGGTCGCTTCGTTCGAGAGAGATGATGCTGATCGTCTTCTTTACTTCTGTTCGAAGCCTGGACAAGACAAACTTCCTAATAATTCGATTCTTTATGCCTCTCCAAGTTGGTTGAAGTCGCCTGCCCCAACTCGAAAGAGGCCTAAGCCTGGAATAAATGTTGGTTTCCTTAGTAGCCTTGCCCGTCCAAACATGTCATCCGCCAGAATTGACGAACAAAACATGGAGATGGCATTGATGCATGGCTTCAGCACATCCTTACTGCCTGCTCGGCAAAGGTTGAAAGTCCCAGCAATGAGGCCAATTCCTCGCCCTCATCGCCATAAAATGACACTTTTCTCTGGACCGGCTGAGGCAAATGGTCATGATAGAGGCCAAATTAAGCCTAAAATAGCAGTTGTTACTCCTCCGAAGCACATTGTCGTTCGATCAACTTCTGGACCACAGCAAAAATCATTTCCGAGCTGGTCTCAGTCTAAGCATATTATTTCCCTCAATCCACTGCCCTTGAAGAAACATGGTTGTGGCAGAAACCCAATACACGATTGCACTGAGGAGGATTTTTTGAAGGATGTACTGCAGTTTATGGTTGAACGAGGACACACCCGCCTCGTTCCTCCCGGTGGGCTCAGTGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTCGACCTATACAACTTGTATAAGGAGGTGGTTTCCAGAGGCGGATTTCGTGTTGGGAATGGTATCAACTGGAAAGGACAGATCTTTTCGAAAATGAGCAATTACACGATGACCAATAGAATGACAGGGGCCGGGAATACGCTGAAAAGGCACTACGAAACATACCTTCTCGAATACGAACTTGCCCACGATGATGTTGATGGGGAATGCTGCCTATTGTGTCACAGTAATGCCGCCGGAGATTGGGTGAACTGCGGGATCTGTGGTGAGTGGGCTCACTTTGGCTGTGATCGAAGGCAAGGTCTCGGTGCGTTTAAGGTGGGTGAGGCCGGAGGGGGGGAGGGCGGCGTAGACTATTCCGGTTCTATTTGCCCCGGCCTCATTACCCCAGTTCCGGCGGTGGTCGGAGAATCTGGGCTGGGGACTGCTTCCTCATGTACAACATTACGATAA 2355 46.88 MMFHPQGAVRRTCRLLAVTSEDLVEPKRKKDNGEEHLRYPFPELQSSGRLEVRSLASPSRAEFSKVVESYQPNLIYLRGALLENDEIGSLSWGGVDLSTVGLIHDLFGTPLPTTVYLEIPNGEELAKALHSKGIPYVIYWKNAFSRYAATHFCNALLSVLQSSSAHAWDVFQLAQASFRLYCSQNNDLHLRNEHEVSDDFCPQLLGERLQINIEPSESDMAKDEEDSLGTLPTVNIYAEDVSMKFLVCGELSKLDAYLLGAFEDGLNALLNIEIRGSKLHGKFSAPPPPLQAEVFAPGVVTMRCDISTSTYAHIALLLSGSAQTCFDDQLLENHIKREIIENSQPVHALTDGEESKVALSEPRKSASVACGAAVFEVGMKVPNWASQILRQLAPDISYRSLVALGIACIQGVPVASFERDDADRLLYFCSKPGQDKLPNNSILYASPSWLKSPAPTRKRPKPGINVGFLSSLARPNMSSARIDEQNMEMALMHGFSTSLLPARQRLKVPAMRPIPRPHRHKMTLFSGPAEANGHDRGQIKPKIAVVTPPKHIVVRSTSGPQQKSFPSWSQSKHIISLNPLPLKKHGCGRNPIHDCTEEDFLKDVLQFMVERGHTRLVPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMSNYTMTNRMTGAGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNAAGDWVNCGICGEWAHFGCDRRQGLGAFKVGEAGGGEGGVDYSGSICPGLITPVPAVVGESGLGTASSCTTLR 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30939763 30944554 - BLOR17348 Blo06g00765 62058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00765 784 Gene3D - 590 704 IPR036431 GO:0003677
Blo06g00765 784 SMART ARID_2 591 694 - -
Blo06g00765 784 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Blo06g00765 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 740 IPR042293 -
Blo06g00765 784 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Blo06g00765 784 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Blo06g00765 784 CDD ARID 596 694 - -
Blo06g00765 784 SMART bright_3 595 699 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00765 - - - jre:109004980 1026.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00765 Blo07g00805 CCT
Blo06g00765 Blo07g00805 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00765 Blo-Chr6:30939763 Blo07g00805 Blo-Chr7:25886824 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00329 . 27 364 ARID Transcription Factor Family AT1G04880 59.5 2.6e-100 362.8
Blo01g01615 . 871 1140 ARID Transcription Factor Family AT1G76110 61.0 1.6e-86 316.6
Blo10g00890 BCT 42 310 ARID Transcription Factor Family AT3G13350 52.3 2.9e-74 275.8
Blo07g00805 CCT,ECH 1 780 ARID Transcription Factor Family AT3G43240 54.8 8.9e-239 823.5
Blo06g00765 CCT,ECH 2 740 ARID Transcription Factor Family AT3G43240 55.8 1.2e-235 813.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12501 PF01388 ARID 3.50E-15 CL0123 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00765 Blo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0