Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00788 ATGGTATCCGGCGTGGTAGATGTCCGCTCCCGGCACCCCCAGTCTCTTTCTTCAAGCTTGCATAGAGGACAATTTTCATCAGCATTCCTCAACACGTCAAGTTTTCCAATCTCAAGGCTTCCCTCCACTCCTTCACTGAAGTACCGAAAAATGATCTGCAACTCAGTGGCTAGTGAAGTGGAGCTGCAAGCAGTAGTTACCACAAAATGTTTTTTCGATATCGACATAGGAGGTACGCCTGTTGGTAGAATAACAATTGGCCTCTTCGGAGATGTTGTTCCAAGAACTGTCGAAAATTTTAGAGCCTTGTGCACTGGGGAAAAGGGCTATGGCTATAAGGGATGCTCCTTCCACAGAATTATCAAAGATTTCATGATTCAGGGTGGTGACTTCACAGAAGGAGATGGAACTGGAGGAGTTAGCATCTACGGTCCAAGCTTTAAGGATGAAAACTTTTCGCTGAAGCACGTTGGACCTGGAGTTTTGAGCATGGCTAATGCTGGGCCTGACACTAATGGAAGCCAGTTCTTCATCTGCACTGTGAAGACTCCATGGCTGGACAATCGCCATGTCGTGTTTGGAAATGTCATCGACGGGATGGATCTTGTTCGAAAGCTTGAATCTCAAGAAACAAGCAGGTCCGACTGCCCCAAGTTACCGTGCAGAATAATTAATTGTGGAGAGTTGCCTGCCGATGGCTGA 702 46.87 MVSGVVDVRSRHPQSLSSSLHRGQFSSAFLNTSSFPISRLPSTPSLKYRKMICNSVASEVELQAVVTTKCFFDIDIGGTPVGRITIGLFGDVVPRTVENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGVSIYGPSFKDENFSLKHVGPGVLSMANAGPDTNGSQFFICTVKTPWLDNRHVVFGNVIDGMDLVRKLESQETSRSDCPKLPCRIINCGELPADG 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31181427 31183365 + BLOR17371 Blo06g00788 62081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00788 233 Gene3D - 54 232 IPR029000 -
Blo06g00788 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 175 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 175 187 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 112 129 IPR020892 GO:0003755|GO:0006457
Blo06g00788 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 232 - -
Blo06g00788 233 SUPERFAMILY Cyclophilin-like 61 229 IPR029000 -
Blo06g00788 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 73 227 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 71 228 IPR002130 GO:0000413|GO:0003755
Blo06g00788 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 29 232 - -
Blo06g00788 233 CDD cyclophilin_ABH_like 69 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00788 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - tcc:18613831 360.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00788 Blo12g00285 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00788 Blo-Chr6:31181427 Blo12g00285 Blo-Chr12:16962520 4.66E-89 dispersed
Blo16g01123 Blo-Chr16:39732468 Blo06g00788 Blo-Chr6:31181427 6.31E-08 dispersed
Blo18g00288 Blo-Chr18:3024210 Blo06g00788 Blo-Chr6:31181427 3.90E-14 dispersed
Blo04g00385 Blo-Chr4:3113790 Blo06g00788 Blo-Chr6:31181427 3.47E-66 transposed
Blo01g00593 Blo-Chr1:6546296 Blo06g00788 Blo-Chr6:31181427 4.07E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012313 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28