Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00813 ATGAGAACCAGGAGAGCCTCTTATCCTAGGGAAGCAACCCTACCCTTGAAGAGAAGTAACGACGACGCCGGAGGACTCTCGTTGTGCTGCCGGAAAAGGAATAAATTATCCCCCCACGCTTATGCTTTCTTTGACTCCTTGCCGGACGACCTTGTCATCTCTATACTCTGCAAACTCTCCTCCTCTGCGGCCTGCCCTTCCGATTTCGTCAACGTTTTAATGACATGCAAAAGGCTGAAGGGCTTAGCTCTTCATCCGCTGGTTTTGTGCAAAGCTTCAGAAAAGACGTGTGACGTTAAGGCGAAAAACTGGTCGGAATCAGCTCACACTTTCCTTAAACGGTGCTGCGACGCCGGGAACGTTGAGGCTTGTTATACTCTCGGCATGATTCGGTTTTACTGTTTGCAAAACCGAGGAAGCGGAGCTTCTCTAATGGCGAAAGCTGCGATTTGCTCGCATGCTGTTGCGTTATACTCGCTCGCCGTTGTCCAGTTCAACGGCAGCGGTGGTTCGAAAAACGACAAGGATCTCAGGGCTGGCGTAGCGCTTTGTGCGCGTGCCGCCTTTCTTGGTCACATCGATGCGCTCAGGGAGCTGGGCCACTGCCTGCAAGACGGCTACGGAGTTCGTCAAAACATTACGGAGGGGCGGCGGTTCCTCGTACAAGCAAACGCCCGTGAGCTCGCCGCGGTGCTCTCTTCAGTGGCCGGTGCTGGCGACTCCTTCCCCACTAACCATCGTCACGTTGCAGGGTCCGGCTTCACGCTGCTGAGCGATTTCGGCTGCAACGTCCCAGCGCCGGAGACTCATCCGGCCAATCGCTTCATGGTGGAGTGGTTTTCAGCGGCGCGTGGGAGTTCATTGGATTGTGGGCTGAGGTTATGTTCGCACGAGGGGTGTGGAAGACCAGAGACGAGAAGAAACGAGTTTCGCCGGTGCTCCGTCTGCGGCGTCGTAAACTACTGCTCACGGGCTTGCCAGGCGCTTGATTGGAAGCTCCGCCACAAGATGGAGTGCGTACCCGAGGTCCGATTAGTGGAGGAAGAAGGCGACGTCCCCGACCGTCACGGTGCAGATGGCGGAGCGGAAGTCGTTAACGCGCAAAGTTAA 1110 55.86 MRTRRASYPREATLPLKRSNDDAGGLSLCCRKRNKLSPHAYAFFDSLPDDLVISILCKLSSSAACPSDFVNVLMTCKRLKGLALHPLVLCKASEKTCDVKAKNWSESAHTFLKRCCDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAVALYSLAVVQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSVAGAGDSFPTNHRHVAGSGFTLLSDFGCNVPAPETHPANRFMVEWFSAARGSSLDCGLRLCSHEGCGRPETRRNEFRRCSVCGVVNYCSRACQALDWKLRHKMECVPEVRLVEEEGDVPDRHGADGGAEVVNAQS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31385515 31386849 + BLOR17396 Blo06g00813 62106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00813 369 PANTHER MYND DOMAIN-CONTAINING 1 361 IPR044508 -
Blo06g00813 369 PANTHER OSJNBA0044M19.1 PROTEIN 1 361 - -
Blo06g00813 369 MobiDBLite consensus disorder prediction 350 369 - -
Blo06g00813 369 Gene3D - 291 344 - -
Blo06g00813 369 Gene3D Tetratricopeptide repeat domain 86 236 IPR011990 GO:0005515
Blo06g00813 369 ProSiteProfiles Zinc finger MYND-type profile. 297 339 IPR002893 -
Blo06g00813 369 SUPERFAMILY HIT/MYND zinc finger-like 294 341 - -
Blo06g00813 369 SUPERFAMILY HCP-like 103 224 - -
Blo06g00813 369 Pfam MYND finger 300 339 IPR002893 -
Blo06g00813 369 SUPERFAMILY F-box domain 40 96 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00813 - - - zju:107433978 526.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00813 Blo-Chr6:31385515 Blo16g00266 Blo-Chr16:6273403 4.64E-115 dispersed
Blo06g00813 Blo-Chr6:31385515 Blo04g01169 Blo-Chr4:20411352 1.01E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00813 Blo_Chr06 FPKM 22.755102 21.522738 44.38895 45.156536 106.782333 100.998932 109.814743 46.864521 49.004738 46.514503