Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00819 GAAAATCCCGATTGCCGCAGGAGGGGAAAGAAAATGGCTCCGAAGCTGAAGGAGAAACCGAAACCGTCTCTTCCGTCGCAGCCTGCTCCTGCCATTGAAGATCTGTTCACTTCTCTTGATAGGCACATCCAGCGATCGGAATTCGACCAAGCCGTCAAAGTCGCCGACCAAGTTCTCTCGATCGCTCCGGGAGATGAAGACGCCCTTCGATGCAAGGTCGTGGCATTGATTAAGGCCGATAGAATTGGCGATGCTCTCTCTGTAGTTCAGTCTTCTCAGAAGCTCGCGGTTGATTTTAGCTTCTTCAAGGTGTACTGTTTATACAGGCAGAATAAGTTGGACGAAGCTGTGGAGTCATTGAAGATCCAAGAAAAAACTACTACAACAATGTTGTTAGAATCCCAGATTTTGTATCGTTTAGGAAACATGAATGCTTGTGTAGATATTTATCAGAAACTTCAAAAGTCCAAGATTGACTCTTTAGAAACAAACTTCGTTGCTGGTCTAATTGCTGCTGGGAGATCTTCTGAAGTGCAAGGGATGTTGGAGGCTCTTAGGATAAAAGCAACCAGCAGCTTTGAGTTGGCATACAATACTGCATGTTCATTGATTGACAAGAGTAAATATAAAGATGCTGAGCAACTCTTGCTGACAGCCCGAAGAACTGGTCAAGAAACACTCATGGAAGAAAATCTGCCAGATGATGAAATAGAGATTGAATTGGCACCCATAGCTGTCCAACTAGCTTATGTTCAGCAGCTTCTTGGGCAAACGTCTGAAGCAATTGAAGCTTATAAAGATATAATAAGCCGAGATATGGCAGACGAATCATCACTTGCTGTGGCGGTGAACAATCTCATTGTTCTGAAAGGTCCAAAAGATGTTTCAGATAGTTTGAGGAAGTTTGATAAGCTTAAAGAAAAAGACTCACAGAATTTCCAGCTCTCTTGTGGACTTGACTTGAAGATTTCTCCTAAAGAAAAGGAAGCAATATACACAAATCGGGTCCTTCTGCTACTCCATGCGAATAGGATGGATCAGGTCCTATATTTGGTTTCCTTAACAAATTTTTTGTGCTTATATAATGATCTCTATTGTCCGGTCCAGGCTCGAGAGCTCGGGGCTTCTTTGTCTGTCATGTTTCCAAACAGTGTGACACCAGTTCTGCTTCAGGCTGCTGTTTTGGTGAGAGAGAACAAAGCTAGCAGAGCTGAGGAAGTTTTAGGGAAGTTTGCTGAAACTTTCCCAGACAAGTCGAAGGTGATTCTGTTAGCCAGGGCCCAGGTTGCTGCTGCTGCTGGTCATCCCCTTATTGCAGCGGATTCGTTGGCTAGAATCCCTGATATCCAACACATGCCTGCTACAGTTGCTACTCTTGTGTCTCTAAAAGAGCATGCTGGAGACATCAATGGTGCAGCTACTGTGCTCGAGTCTGCAATCAAATGGTGGTCAAATTCCATGACAGAGGACAACAAGCTTGATATTATAATGCAGGAGGCGGCTTCATTCAAACTTAGGCATGGTCGCAAAGAAGAAGCTGCCCATCTTTACGAGAATCTTGTCAAGAACAATGGAAGTTTAGAAGCACTCGTTGGATTGGTAAATACTGTTGCGCGTGTAGACATTGACAAGGCAGAAACTTATGCGAGGCAGCTTAAGCCGTTGCCAGGGTTGAATGGAATTGATGTGGATAGTCTGGAGAGGAGTTCGGGGGCAAAACACATTGAGGGTGATAATAAAGTTGCAGTCTCAGATACATACGAGGAGGGGAAAAGTAAGGTTAAATCGAAGAAAAAGAGAAAGAGAAAGCCAAGATACCCTAAAGGCTTTGACCCTGCAAACCCAGGTCCTCCCCCCGACCCGGAAAGATGGCTTCCAAAGAGAGAGAGGTCGAGCTATAGACCAAGAAGAAAGGACAAGCGGGCAAGTCAGGTGAGAGGCTCCCAAGGTGCAGTAACGAGAGAAAAGCATGAAACTAGTGCGACTACAGCCAGTTCCAACAGTTCGAACCCAAAATCAAACCAAGCAACAACATCCAAAGGAGCCTCACAAAGCAGCACCGGTGGGGAACAATCCAAGCCCTCCTCAAGGTCCTCAAAAAAGAATTCTGGTCTGAGTGTTCCTGGATGTACTAGACTCAGTGTTGAGGGCATTATAAGTTGTTTGAAGGAGTTGAAGTCAACGGGTACATCAACACGTGAAGAAGGGGTGAAGCATTTAAGAATTGGCGGGATTTACGGTGTTACACAAACGCACTTTGAAGAGTTAAACTTTTTGCTGGGCAATGATTTATCGATCCATAAAAATGACCACAAGCCTCATTTCTACTACAGAGGAAATTTTTATCTATCTTGCAATGATGATCGTTCTATTGATATTGAAACATGCCCGAGATGTCTGAACTTGAGGCTTGTTTATGATTGCCCACTAAGTGATTGTGGGGGAAAAGACCATCCCACTCGAGTCTGCAGAGCATGCTCGCTGTGCATAGCCAGGTGCGTTGCATGCGGACGATGTATTAATGATGGTGAATACGAGGAAACCTTTTGCCTGGAATTGCTTTGCTCTGATTGTTTAAAGCACATTTTGGAAATTGAAGAGAATTATTGTAAGATTGTTGCCCCTTCTATACCTTGA 2637 44.33 ENPDCRRRGKKMAPKLKEKPKPSLPSQPAPAIEDLFTSLDRHIQRSEFDQAVKVADQVLSIAPGDEDALRCKVVALIKADRIGDALSVVQSSQKLAVDFSFFKVYCLYRQNKLDEAVESLKIQEKTTTTMLLESQILYRLGNMNACVDIYQKLQKSKIDSLETNFVAGLIAAGRSSEVQGMLEALRIKATSSFELAYNTACSLIDKSKYKDAEQLLLTARRTGQETLMEENLPDDEIEIELAPIAVQLAYVQQLLGQTSEAIEAYKDIISRDMADESSLAVAVNNLIVLKGPKDVSDSLRKFDKLKEKDSQNFQLSCGLDLKISPKEKEAIYTNRVLLLLHANRMDQVLYLVSLTNFLCLYNDLYCPVQARELGASLSVMFPNSVTPVLLQAAVLVRENKASRAEEVLGKFAETFPDKSKVILLARAQVAAAAGHPLIAADSLARIPDIQHMPATVATLVSLKEHAGDINGAATVLESAIKWWSNSMTEDNKLDIIMQEAASFKLRHGRKEEAAHLYENLVKNNGSLEALVGLVNTVARVDIDKAETYARQLKPLPGLNGIDVDSLERSSGAKHIEGDNKVAVSDTYEEGKSKVKSKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRASQVRGSQGAVTREKHETSATTASSNSSNPKSNQATTSKGASQSSTGGEQSKPSSRSSKKNSGLSVPGCTRLSVEGIISCLKELKSTGTSTREEGVKHLRIGGIYGVTQTHFEELNFLLGNDLSIHKNDHKPHFYYRGNFYLSCNDDRSIDIETCPRCLNLRLVYDCPLSDCGGKDHPTRVCRACSLCIARCVACGRCINDGEYEETFCLELLCSDCLKHILEIEENYCKIVAPSIP 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31450686 31460551 + BLOR17402 Blo06g00819 62112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00819 878 MobiDBLite consensus disorder prediction 646 708 - -
Blo06g00819 878 Gene3D Tetratricopeptide repeat domain 31 181 IPR011990 GO:0005515
Blo06g00819 878 Gene3D Tetratricopeptide repeat domain 183 554 IPR011990 GO:0005515
Blo06g00819 878 PANTHER SIGNAL RECOGNITION PARTICLE 72 369 701 IPR026270 GO:0006614
Blo06g00819 878 PANTHER SIGNAL RECOGNITION PARTICLE 72 27 352 IPR026270 GO:0006614
Blo06g00819 878 SUPERFAMILY TPR-like 43 218 IPR011990 GO:0005515
Blo06g00819 878 SUPERFAMILY TPR-like 194 524 IPR011990 GO:0005515
Blo06g00819 878 Pfam SRP72 RNA-binding domain 584 635 IPR013699 GO:0006614|GO:0008312|GO:0048500
Blo06g00819 878 MobiDBLite consensus disorder prediction 584 708 - -
Blo06g00819 878 MobiDBLite consensus disorder prediction 1 29 - -
Blo06g00819 878 Pfam Putative TPR-like repeat 70 159 IPR031545 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00819 K03108 SRP72; signal recognition particle subunit SRP72 - qsu:112015587 973.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1136 . . Bda01g02193 . Bpe13g00519 . Bma14g01878 Bma15g00246 . Cmo18g00710 . Cma18g00723 . Car18g00669 Sed06g1724 Cpe09g00566 Cpe01g01595 Bhi07g01864 Tan04g0101 Cmetu10g0075 . Hepe10g0079 . . . . . . . . . Cone13ag1120 Cone19ag1105 Cone8ag0721 . Lsi04g00650 . . Cme10g00629 Blo06g00819 . . . . . Bma01g00025 . . . . Cma04g01812 . Car04g01824 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007046 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00819 Blo_Chr06 FPKM 48.80201 50.347717 71.195625 73.414543 67.147247 76.509026 70.802513 131.556519 142.209106 132.286621